Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAK010000111.2169.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAK010000111.2169.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAK010000111.2169.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZAK010000111.2169.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 47 62 196 147 132 -12.06 0 99 0 - 0 - - 0001 +1 1 40 237 234 195 11.82 99 99 - - 0 - - -1 708 468 328 378 138 -8.82 0 - 99 - 0 - - -3 905 794 651 252 141 -11.94 0 - 99 - - 0 0 +3 756 828 989 231 159 -15.32 0 - 99 0 - 0 - -2 1021 523 392 627 129 -7.33 0 - 99 - 0 0 - -1 1095 1077 898 195 177 -10.33 0 - 99 - 0 - - -1 1236 1218 1096 138 120 -4.43 0 - 99 - 0 0 - +3 1149 1281 1418 267 135 -14.64 0 - 99 0 - 0 - 0002 +2 332 344 1546 1212 1200 15.86 99 - 99 - - - - -1 1605 1410 1288 315 120 -14.92 0 - 99 0 0 0 - -2 2062 2020 1760 300 258 -8.67 0 - 99 - - 0 - -1 2124 2082 1957 165 123 -4.52 0 - 99 - 0 - - -2 2557 2518 2171 384 345 0.18 0 - 99 - - 0 - 0003 +2 1610 1622 2668 1056 1044 12.36 99 - 99 - - - - 0004 -3 2798 2759 2628 168 129 3.88 99 - - - - - 99 +1 2689 3109 3273 582 162 2.53 0 0 - - 99 - - -3 3422 3413 3270 150 141 -11.80 0 0 - - 99 - 0 0005 -1 3480 3468 2704 774 762 7.90 99 - - - 99 - - +1 3496 3499 3666 168 165 -9.49 0 0 99 - - - - 0006 +2 3503 3506 3685 180 177 -1.54 99 - 99 - - - - -3 3740 3683 3534 204 147 -13.35 0 - 0 - - 99 0 +3 3579 3609 3746 165 135 -9.78 0 - - 0 - 99 - 0007 -2 3868 3850 3530 336 318 7.41 99 - - - - 99 - +1 3979 4006 4200 219 192 4.15 0 0 - - 99 - - +2 4106 4133 4294 186 159 1.19 0 - 0 - 99 0 - -2 4339 4252 4067 270 183 -9.53 0 - - - 99 0 - +3 4227 4251 4388 159 135 -14.94 0 - - 0 99 - - 0008 -1 4653 4641 3952 699 687 9.23 99 - - - 99 - - +2 4301 4481 4657 354 174 -6.82 0 - 0 - 99 - - -1 5001 4959 4831 168 126 -16.60 0 - 17 - 0 82 0 -1 5244 5211 5005 237 204 -12.36 0 - 0 - 0 99 - +3 5103 5130 5258 153 126 -10.62 0 - 0 0 - 99 - +2 4661 4838 5287 624 447 2.20 0 - 0 - - 99 - +2 5396 5396 5635 237 237 -7.22 0 0 0 - - 99 - +1 5389 5389 5652 261 261 -8.94 0 0 - - - 99 - 0009 -2 5770 5752 4694 1074 1056 9.78 99 - - - - 99 - +3 5841 5853 5978 135 123 -10.41 0 - 0 0 - 99 - +1 6211 6223 6363 150 138 -13.33 0 0 0 - - 99 - +2 5768 5975 6373 603 396 -2.83 0 - 0 - - 99 - 0010 -2 6415 6382 5816 597 564 10.68 99 - - - - 99 - 0011 -1 6726 6714 6580 144 132 -15.96 99 - - - 99 - - 0012 +1 6595 6604 6759 162 153 6.45 99 99 - - - - - 0013 -2 6895 6805 6674 219 129 0.25 99 - - - - 99 - 0014 +1 6760 6808 7011 249 201 1.86 99 99 - - - - - 0015 -1 7101 7050 6904 195 144 -7.29 99 - - - 99 - - +3 7053 7080 7205 150 123 -13.08 0 - 99 0 - 0 - -1 7296 7245 7111 183 132 -15.97 0 - 99 - 0 0 - +3 7296 7344 7481 183 135 -7.75 0 - 99 0 - 0 - 0016 +2 6983 6986 7720 735 732 6.95 99 - 99 - - - - 0017 -2 7777 7699 6995 780 702 -2.19 0 - 99 - - 0 - 0018 -1 8034 7752 7630 402 120 -4.67 16 - - - 16 13 69 +1 7846 7894 8061 213 165 -8.06 0 0 - 99 - - 0 -3 8270 8042 7773 495 267 0.26 0 - - 99 - - 0 -1 8370 8364 8191 177 171 -12.97 0 - - 99 0 - - -2 8425 8410 8252 171 156 -8.22 0 - - 99 - 0 - +1 8275 8299 8457 180 156 -16.43 0 0 - 99 - - 0 -2 8563 8548 8426 135 120 -14.00 0 - - 99 0 0 0 -3 8864 8564 8271 591 291 -0.55 0 - - 99 - - 0 -2 8923 8917 8771 150 144 -9.79 0 - - 99 - 0 - 0019 +3 7737 7764 8927 1188 1161 6.68 99 - - 99 - - - -2 9550 9190 9005 543 183 -0.62 0 - 99 - - 0 - -1 9561 9510 9367 192 141 -6.94 0 - 99 - 0 0 - +3 9522 9636 9806 282 168 -16.31 0 - 99 0 - - - 0020 +2 8861 8933 9928 1065 993 11.82 99 - 99 - - - - 0021 -2 9982 9973 9719 261 252 3.89 99 - - - - 99 - -2 10282 10231 10091 189 138 -4.19 0 99 - - 0 0 - -1 10314 10296 10078 234 216 0.11 0 99 - - 0 - - +2 10220 10298 10444 222 144 -20.97 0 99 0 - - - 0 -3 10496 10430 10293 201 135 -23.60 0 99 0 - - - 0 +3 10386 10401 10559 171 156 -10.65 0 99 - 0 0 - - -3 10652 10631 10497 153 132 -10.83 0 99 - - 0 - 0 -1 10977 10656 10315 660 339 1.92 0 99 - - 0 - - +2 10898 10952 11089 189 135 -1.18 0 99 0 - - 0 - 0022 +1 9991 10000 11148 1155 1146 12.52 99 99 - - - - - -2 11176 11068 10922 252 144 -1.93 0 99 0 - - 0 - -1 11250 11145 10978 270 165 -0.78 0 99 - - 0 0 - 0023 +2 11090 11135 11257 165 120 -3.10 99 - 99 - - - - 0024 -2 11437 11416 11291 144 123 -6.60 99 - - - - 99 - +3 12024 12039 12176 150 135 -11.93 0 - 99 0 - 0 - -2 12586 12556 11897 687 657 -1.14 0 - 99 - - 0 - +3 12570 12603 12728 156 123 -5.78 0 - 99 0 - - - +3 12729 12732 12881 150 147 -13.32 0 - 99 0 - 0 - 0025 -2 13561 13318 12683 876 633 -2.75 0 - 99 - - 0 - +3 13338 13455 13580 240 123 -12.92 0 - 99 0 - - - -1 13668 13623 13498 168 123 -10.45 0 - 99 - 0 - - +3 13581 13605 13745 162 138 -9.97 0 - 99 0 - - - -1 13998 13923 13672 324 249 -7.28 0 - 99 - 0 - - -1 14352 14331 14176 174 153 -10.33 0 - 99 - 0 0 - -2 14413 14008 13706 705 300 -5.56 0 - 99 - - 0 - +3 14328 14385 14522 192 135 -15.26 0 - 99 0 - - - 0026 +2 11570 11630 14815 3243 3183 17.09 99 - 99 - - - - -1 14982 14952 14812 168 138 1.07 0 - 99 - 0 - - -1 15480 15423 15274 204 147 -8.56 0 - 99 - 0 0 - -2 15625 15433 15233 390 198 -7.47 0 - 99 - - 0 - +3 15549 15567 15689 138 120 -15.91 0 - 99 0 - - - +3 15690 15735 15908 216 171 -10.65 0 - 99 0 - 0 - -3 15944 15914 15777 165 135 -13.39 0 - 99 - - 0 0 -1 16293 16254 16096 195 156 -5.83 0 - 99 - 0 0 - -2 16297 15835 15626 669 207 -2.12 0 - 99 - - 0 - +3 16314 16380 16523 207 141 -14.29 0 - 99 0 - 0 - 0027 +2 14816 14834 16591 1773 1755 15.77 99 - 99 - - - - -2 16591 16456 16298 291 156 -7.88 0 - 99 - - 0 - 0028 -1 16893 16803 16600 291 201 -6.11 99 - - - 99 - - -1 17349 17076 16894 453 180 -4.48 0 99 - - 0 - - -3 17480 17453 17319 159 132 -11.97 0 99 - - - - 0 +2 17354 17372 17497 141 123 -5.47 0 99 0 - 0 - - -2 17572 17569 17411 159 156 -10.56 0 99 - - 0 0 - -1 17682 17652 17350 330 300 -2.35 0 99 - - 0 - - -3 17765 17654 17529 234 123 -13.33 0 99 - - 0 - 0 0029 +1 16612 16612 17868 1254 1254 17.04 99 99 - - - - - 0030 +3 17928 17979 18125 195 144 -4.58 99 - - 99 - 0 - -2 18277 18109 17966 309 141 -6.91 0 - - 99 - 0 - +3 18135 18147 18281 144 132 -7.78 0 - 99 0 - 0 - -2 18853 18832 18632 219 198 -4.68 0 - 99 - - 0 - -1 19155 19155 19030 123 123 -9.59 0 - 99 0 0 0 0 +3 19014 19071 19205 189 132 -14.57 0 - 99 0 - 0 0 -2 19210 18994 18854 354 138 -8.22 0 - 99 - - 0 - 0031 +2 18023 18023 19228 1203 1203 8.56 99 - 99 - - - - -3 19262 19187 18960 300 225 -3.09 0 - 99 - - 0 0 0032 -3 19559 19529 19407 150 120 -6.35 99 - - - - - 99 +1 19477 19516 19653 174 135 -6.70 0 0 99 - - - - 0033 +2 19427 19538 19663 234 123 -1.25 99 - 99 - - - - 0034 +3 19821 19827 19964 141 135 -3.62 99 - - 99 - - - -3 20459 20384 20220 237 162 -11.32 0 - 99 - - - 0 -1 20817 20808 20683 132 123 -3.35 0 0 99 - 0 0 - -2 20839 20794 20660 177 132 -13.26 0 - 99 - - 0 - +1 20674 20725 20868 192 141 -2.01 0 0 99 - - - -