Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VUNF010000061.2274.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VUNF010000061.2274.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VUNF010000061.2274.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VUNF010000061.2274.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 284 293 418 132 123 -2.52 98 0 98 - - 1 - 0002 -2 439 346 95 342 249 -1.68 99 0 - - - 99 - 0003 +3 330 369 587 255 216 -8.42 82 17 - 82 - - - 0004 -3 662 647 459 201 186 -4.01 80 19 - - - - 80 0005 -1 672 672 523 147 147 -2.98 65 34 - - 65 - - 0006 -1 1092 882 673 417 207 -2.59 34 65 - - 34 - - 0007 +2 959 977 1105 144 126 -3.93 90 9 90 - - - - 0008 +1 1 958 1113 1110 153 -5.04 99 99 - - - - - 0009 -3 1331 1313 1170 159 141 6.84 99 - - - - - 99 -3 1526 1469 1332 192 135 -5.30 2 - - 95 - 2 2 -2 1558 1420 1277 279 141 0.13 0 - - 99 - 0 - 0010 +3 1242 1266 1598 354 330 -0.64 99 - - 99 - - - 0011 -2 1714 1690 1559 153 129 -0.16 99 - - - - 99 - 0012 +1 1618 1627 1767 147 138 -6.65 99 99 - - - - - -2 1921 1921 1793 126 126 -2.17 0 - - 99 - 0 - 0013 +3 1764 1764 1940 174 174 2.15 99 - - 99 - - - 0014 -3 2444 2423 2277 165 144 10.43 99 0 - - - - 99 0015 -1 2652 2628 2398 252 228 10.20 99 - - - 99 - - +3 2976 2979 3146 168 165 -3.70 0 - - 0 - - 99 0016 -3 3146 2999 2622 522 375 4.74 99 - - - - - 99 0017 -2 3382 3268 3143 237 123 3.59 99 - - - - 99 - 0018 +2 3185 3245 3391 204 144 -5.11 99 - 99 - - - - 0019 -3 3494 3443 3288 204 153 1.30 99 - - - - - 99 0020 +3 3576 3597 3731 153 132 6.82 99 - - 99 - - - 0021 +3 3732 3756 3971 237 213 11.57 99 - - 99 - - - 0022 -3 4325 4271 4143 180 126 0.47 99 - - - - - 99 -1 4485 4410 4246 237 162 -6.80 0 99 - - 0 - - 0023 +3 4428 4434 4559 129 123 -1.89 23 76 - 23 - - - 0024 +1 4159 4171 4641 480 468 0.88 99 99 - - - - - 0025 -3 4649 4628 4476 171 150 6.77 99 0 - - - - 99 0026 -1 5253 5244 5074 177 168 2.48 99 - - - 99 - - 0027 -2 5374 5305 5132 240 171 -2.31 99 - - - - 99 - 0028 -3 5450 5390 5169 279 219 -8.91 99 - - - - - 99 +1 5227 5326 5514 285 186 -11.07 0 0 0 99 - - - 0029 -2 5542 5539 5375 165 162 -7.84 38 - 8 52 - 38 - 0030 +1 5752 5815 5937 183 120 -3.51 99 99 0 0 - - 0 -3 5981 5864 5646 333 216 -11.13 0 - - 99 - - 0 0031 +2 5819 5924 6082 261 156 -9.16 41 - 41 27 30 - - 0032 -1 6213 6177 5911 300 264 -7.11 15 - - 84 15 - - -2 6277 6205 6074 201 129 -3.23 4 - - 89 5 4 - 0033 -1 6387 6381 6232 153 147 -6.02 54 - - 45 54 - - -3 6467 6440 6246 219 192 -11.13 2 - - 97 - - 2 0034 +3 5193 6369 6527 1332 156 -7.76 99 - 0 99 - - - 0035 +2 6320 6491 6673 351 180 -3.44 99 - 99 - - - - 0036 -1 6774 6669 6499 273 168 -2.13 95 - 4 - 95 - - -1 7050 6942 6778 270 162 -8.16 0 - 99 - 0 0 - 0037 -2 7246 6964 6641 603 321 -5.51 99 - - - - 99 - -2 7609 7432 7247 360 183 -13.01 0 - 99 - - 0 - 0038 -1 7647 7512 7387 258 123 -8.13 49 29 0 - 49 20 0 0039 +2 6674 6689 7651 975 960 -7.58 5 - 5 - 94 - - 0040 -2 8293 8284 8132 159 150 -4.31 35 - - 17 - 35 47 -3 8537 8135 8001 534 132 -4.48 7 - 0 92 - - 7 0041 -2 8635 8620 8468 165 150 -5.60 78 - - 21 - 78 - 0042 -3 8882 8768 8538 342 228 -6.02 99 - - 0 - - 99 0043 +3 7584 8715 8900 1314 183 -3.59 99 - - 99 - - - 0044 -2 8950 8950 8795 153 153 -1.95 99 - - - - 99 - 0045 -3 9287 9068 8919 366 147 -2.09 99 - - - - - 99 0046 -2 9331 9304 9083 246 219 -0.35 99 - - 0 - 99 - +3 9030 9186 9335 303 147 -3.72 0 - - 0 - 99 - 0047 -3 9827 9716 9579 246 135 -7.57 99 - - - - - 99 -1 9843 9738 9601 240 135 -9.31 2 - - - 2 - 97 0048 -2 9850 9844 9713 135 129 -5.99 13 - - - 86 13 - 0049 -1 10053 10032 9907 144 123 2.20 99 - - - 99 - - +2 9950 9989 10165 213 174 -2.26 0 99 0 - - - - 0050 +1 9937 10075 10221 282 144 -0.11 31 31 - - 54 13 - 0051 -1 10245 10182 10054 189 126 4.58 42 27 - - 42 29 - +1 10273 10312 10470 195 156 -6.40 5 5 28 - - 65 - +3 10491 10512 10646 153 132 -10.81 4 - 79 4 - 15 - +2 10166 10637 10828 660 189 -6.54 8 - 8 - - 91 - 0052 +3 10647 10713 10850 201 135 0.17 98 - - 98 1 0 - -1 10923 10845 10699 222 144 -2.02 3 - - 95 3 0 - 0053 +1 10861 10912 11052 189 138 0.09 35 35 0 - - 64 - +2 10829 10934 11065 234 129 -1.01 2 - 2 - - 97 - 0054 -2 11155 10189 9995 1158 192 3.59 89 10 - - - 89 - +2 11297 11495 11686 387 189 -9.19 0 - 0 - 93 6 - 0055 -1 11715 11703 11431 282 270 -1.17 99 - - - 99 0 - 0056 +3 11676 11736 11870 192 132 -7.52 35 0 0 35 - 63 - 0057 +2 11972 12047 12232 258 183 -2.35 91 - 91 - - 8 - +1 12097 12127 12306 207 177 -6.48 2 2 - - - 97 - 0058 -2 12376 11434 11309 1065 123 -3.31 97 - 2 - - 97 - 0059 +2 12314 12320 12466 150 144 -4.25 42 - 42 - 57 - - 0060 +2 12674 12689 12811 135 120 -4.66 99 0 99 0 0 - - 0061 -3 12962 12947 12780 180 165 -4.76 97 0 - - 2 - 97 +1 12373 12817 12966 591 147 -10.08 0 0 0 - 69 - 30 +2 12812 12827 12985 171 156 -8.67 0 - 0 - 99 - - +3 12867 12873 13046 177 171 -10.09 0 - - 0 99 - - 0062 -3 13427 13298 13176 249 120 -7.43 69 28 - - 2 - 69 +1 12967 13315 13464 495 147 -9.21 0 0 - 0 99 - - 0063 -1 13500 12435 12310 1188 123 -0.27 50 - 49 - 50 - - 0064 -2 13957 13948 13757 198 189 1.71 97 - - 0 - 97 2 +1 13942 13993 14127 183 132 -6.14 3 3 - 0 - - 96 0065 -2 14185 14158 14033 150 123 1.21 99 - - 0 - 99 0 0066 +3 13203 13485 14243 1038 756 -7.02 6 - - 6 - - 93 0067 -3 14255 13643 13518 735 123 -5.68 99 - - 0 - - 99 0068 +1 14137 14188 14334 195 144 2.98 99 99 - - - - - 0069 -1 14478 14457 14227 249 228 6.51 99 - - - 99 - - 0070 +3 14343 14361 14564 219 201 -2.19 99 - - 99 - - - 0071 -1 14643 14634 14479 162 153 -7.04 99 - - - 99 - - 0072 +1 14512 14524 14658 144 132 0.38 99 99 - 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6 84 - - +1 20326 20635 20760 432 123 -11.47 0 0 94 - 5 - - +1 20761 20824 20955 192 129 -7.93 0 0 15 - 83 - - 0097 +2 20639 20879 21019 378 138 3.32 87 - 87 - 12 - - 0098 -1 21021 19932 19801 1218 129 -2.44 14 0 85 - 14 - -