Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSFW010000641.828.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSFW010000641.828.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSFW010000641.828.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSFW010000641.828.AOI_01 Sequence length = 8538 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 160 151 20 138 129 -4.39 0 - - 0 - 0 99 +1 190 223 348 156 123 -1.21 0 0 - 0 - - 99 0001 +3 3 135 485 480 348 -1.59 99 - - 99 - - - +3 486 489 749 261 258 -3.23 0 - - 0 - - 99 +1 718 721 921 201 198 -0.55 0 0 - - - - 99 +3 750 843 1106 354 261 1.78 0 - - 0 - - 99 +1 1006 1021 1143 135 120 0.45 0 0 - - - - 99 +3 1221 1242 1376 153 132 -4.44 0 0 - 0 0 - 99 -1 1428 1425 1165 261 258 0.27 0 - - - 0 - 99 +1 1192 1306 1485 291 177 -1.96 0 0 - - - - 99 -2 1546 1525 1379 165 144 -0.30 0 - - 0 - 0 99 +3 1377 1434 1781 402 345 2.99 0 - - 0 - - 99 +1 1621 1666 1833 210 165 2.80 0 0 - - - - 99 +1 1834 1933 2109 273 174 -5.41 0 0 - 0 - - 99 -2 2176 2164 2042 132 120 -0.84 0 - - 0 - 0 99 +3 1824 1926 2204 378 276 2.11 0 - - 0 - - 99 +1 2293 2389 2523 228 132 2.60 0 0 0 - - - 99 0002 -3 2552 2549 345 2205 2202 8.02 99 - - - - - 99 0003 +2 2393 2417 2569 174 150 2.41 99 - 99 - - - - +3 2781 2784 2930 147 144 1.41 4 - - 4 - - 95 +1 3151 3196 3354 201 156 4.36 0 0 - - - - 99 +3 3939 3954 4085 144 129 1.53 0 - - 0 - - 99 +3 4419 4437 4568 147 129 1.93 0 - - 0 - - 99 0004 -3 4610 4610 2553 2055 2055 10.46 99 - - - - - 99 0005 -1 4974 4971 4744 228 225 1.13 99 - - - 99 - - +3 5151 5160 5309 156 147 4.52 0 - - 0 - 99 - +1 5335 5398 5529 192 129 -0.16 0 0 - - - 99 - -1 5616 5610 5407 207 201 3.63 0 - - - 0 99 - +3 6135 6267 6485 348 216 7.61 0 - - 0 - 99 - -1 7008 7008 6772 234 234 4.83 0 - - - 0 99 - +3 6834 6960 7106 270 144 8.36 0 - - 0 - 99 - +1 6979 6985 7119 138 132 8.13 0 0 - - - 99 - -1 7383 7371 7246 135 123 4.91 0 - - - 0 99 - +3 7287 7302 7439 150 135 5.48 0 - - 0 - 99 - +1 7474 7483 7716 240 231 7.62 0 0 - - - 99 - +2 7601 7658 7798 195 138 9.66 0 - 0 - - 99 - 0006 -2 7843 7837 5030 2811 2805 13.00 99 - - - - 99 - 0007 -3 8120 8105 7959 159 144 5.71 99 - - - - - 99 0008 +1 8044 8050 8178 132 126 4.51 99 99 - - - - - 0009 +1 8179 8263 8451 270 186 1.29 18 18 - - 81 - - 0010 -3 8471 8462 8340 129 120 -1.84 33 - - - 66 - 33 0011 -1 8538 8523 8095 441 426 5.75 99 - - - 99 - -