Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSAQ010000481.678.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSAQ010000481.678.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QSAQ010000481.678.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSAQ010000481.678.AOI_01 Sequence length = 15690 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 16 207 204 189 0.61 99 99 - - - - - 0002 -3 548 536 306 240 228 -3.76 99 - - - - - 99 -1 624 609 427 195 180 1.35 0 99 - - 0 - - -3 716 713 549 165 162 -11.42 0 99 - 0 - - 0 -3 935 866 741 192 123 -9.56 0 99 - 0 - - 0 +2 926 989 1111 183 120 -13.78 0 99 0 - 0 - - -1 1155 1146 820 333 324 1.43 0 99 - - 0 - - 0003 +1 367 370 1656 1287 1284 9.91 99 99 - - - - - -1 1788 1569 1264 522 303 4.98 0 99 - - 0 - - 0004 +2 1649 1667 1873 222 204 -1.49 99 - 99 - - - - -2 2212 2110 1946 264 162 -4.54 0 - - 99 - 0 0 0005 -3 2414 2339 1683 729 654 1.28 99 - - - - - 99 -3 2777 2684 2415 360 267 3.04 0 - - 99 - - 0 0006 +3 1836 1857 2819 981 960 7.96 99 - - 99 - - - -2 2947 2680 2555 390 123 -8.85 0 - - 91 0 0 8 -1 3183 3084 2962 219 120 -8.05 0 - 99 - 0 - - +3 3162 3276 3404 240 126 -10.92 0 - 99 0 0 - - -1 3444 3315 3187 255 126 -15.51 0 - 99 0 0 - - -3 3581 3575 3384 195 189 -12.78 0 - 99 - - 0 0 -2 3730 3664 3362 366 300 3.98 0 - 99 - - 0 - -1 3873 3816 3661 210 153 -3.52 0 - 99 - 0 - - 0007 +2 2852 2999 4027 1173 1026 9.16 99 - 99 - - - - +1 3781 3967 4098 315 129 -4.10 0 0 - - - 99 - 0008 -2 4108 4075 3890 216 183 1.97 99 0 - - - 99 - 0009 +3 4038 4038 4166 126 126 -6.34 99 - - 99 - - - 0010 -3 4391 4286 4149 240 135 -4.26 99 - - - - - 99 0011 +1 4243 4273 4395 150 120 -2.99 57 57 - - 42 - 0 0012 -1 4398 4392 4261 135 129 -5.63 12 79 - - 12 - 8 0013 -3 4601 4580 4455 144 123 2.15 99 - - - - - 99 +1 4501 4546 4713 210 165 3.36 0 0 - 0 99 - - +3 4485 4623 4769 282 144 -3.96 0 - - 0 99 - - -3 4793 4781 4632 159 147 -5.02 0 - - - 99 - 0 +2 5039 5060 5194 153 132 -12.82 0 0 0 - 99 - - +1 4714 4870 5376 660 504 3.30 0 0 - - 99 - - +2 5195 5264 5398 201 132 -18.73 0 - 0 - 99 - 0 -3 5471 5393 5247 222 144 -20.06 0 - 0 - 99 - 0 +3 5409 5436 5600 189 162 -4.97 0 0 - 0 99 - - +1 5377 5395 5613 234 216 4.22 0 0 - - 99 - - 0014 -1 5712 5691 4543 1167 1146 12.43 99 - - - 99 - - -1 6153 6129 5959 192 168 -10.16 0 - - - 0 99 - +3 6213 6255 6398 183 141 -8.41 0 - 0 0 - 99 - +2 6047 6524 6760 711 234 5.22 0 - 0 - - 99 - 0015 -2 6904 6832 5837 1065 993 11.12 99 - - - - 99 - +2 6842 6848 6994 150 144 -7.29 0 - 0 - 99 - - +2 7205 7217 7339 132 120 -11.97 0 0 0 0 99 - - -3 7490 7466 7308 180 156 -15.26 0 0 - - 99 - 0 +1 6901 6958 7494 591 534 2.55 0 0 - - 99 - - +2 7340 7355 7513 171 156 -6.26 0 - 0 - 99 - - +3 7395 7401 7574 177 171 -7.54 0 - - 0 99 - - -3 7955 7871 7704 249 165 -6.85 0 1 - - 98 - 0 +1 7495 7495 8007 510 510 2.78 0 0 - - 99 - - 0016 -1 8007 8001 6838 1167 1161 7.60 99 - - - 99 - - +3 8022 8037 8207 183 168 -6.53 0 99 - 0 - - - +1 8008 8062 8448 438 384 2.21 0 0 - - 99 - - -3 8480 8462 8298 180 162 -9.22 0 - - - 99 - 0 +2 8465 8516 8650 183 132 -13.37 0 0 0 - 99 - - -3 8708 8681 8556 150 123 -11.21 0 0 - - 99 - 0 +1 8449 8590 8766 315 174 3.33 0 0 - - 99 - - 0017 -1 8778 8775 8041 735 732 11.65 99 - - - 99 - - 0018 +2 8660 8711 8869 207 156 -4.14 99 - 99 - - - - 0019 -2 8902 8875 8750 150 123 -1.53 99 - - - - 99 - 0020 +1 8827 8839 8967 138 126 -2.70 99 99 - - - - - 0021 -1 9000 8979 8854 144 123 2.74 99 - - - 99 - - 0022 -1 9165 9156 9001 162 153 1.91 72 - - 27 72 - - 0023 +3 8865 8967 9176 309 207 -0.64 99 - - 99 - - - 0024 +1 9034 9046 9180 144 132 -8.35 99 99 - - - - - -1 9549 9537 9397 150 138 -8.72 0 - - 24 0 - 75 -2 9919 9907 9782 135 123 -10.08 0 - - 99 - 0 0 0025 +3 9345 9378 9944 597 564 8.29 99 - - 99 - - - 0026 -3 9992 9956 9387 603 567 6.79 99 - - - - - 99 -3 10364 10364 10125 237 237 -2.06 0 - - 99 0 - 0 -1 10371 10371 10108 261 261 -7.70 0 - - 99 0 - - -2 10657 10630 10502 153 126 -9.84 0 - - 99 - 0 0 -1 10896 10893 10741 153 150 -16.08 0 - - 72 0 - 27 +1 10759 10801 10935 174 132 -14.52 0 0 - 99 - - 0 0027 +3 9990 10008 11066 1074 1056 9.02 99 - - 99 - - - -3 11099 10922 10473 624 447 3.42 0 - - 99 - - 0 -3 11459 11279 11103 354 174 -4.57 0 99 - - - - 0 -2 11533 11509 11372 159 135 -10.59 0 99 - - - 0 - -3 11654 11636 11466 186 168 2.85 0 99 - 0 - - 0 +3 11421 11508 11693 270 183 -3.03 0 99 - 0 0 - - -1 11781 11754 11491 288 261 5.14 0 99 - - 0 - - 0028 +1 11107 11119 11808 699 687 10.78 99 99 - - - - - -2 12181 12151 12014 165 135 -8.96 0 - - 99 - 0 - +2 12020 12077 12226 204 147 -9.00 0 - 0 99 - - 0 0029 +3 11892 11910 12230 336 318 8.72 99 - - 99 - - - 0030 -3 12257 12254 12075 180 177 1.22 99 - - - - - 99 -1 12264 12261 12094 168 165 -8.41 0 - - - 0 - 99 +2 12338 12347 12490 150 141 -11.32 0 99 0 - 0 - - 0031 +1 12280 12286 13056 774 768 5.21 99 99 - - - - - -1 13101 12651 12487 612 162 4.51 9 90 - - 9 - - +3 13263 13302 13757 492 453 2.63 0 - - 0 - - 99 +3 13758 13800 14060 300 258 -3.43 0 - - 0 - - 99 0032 -3 14210 14198 13152 1056 1044 11.08 99 - - - - - 99 +1 14215 14410 14532 315 120 -16.60 0 0 - 0 - 0 99 -2 14671 14536 14402 267 132 -11.73 0 - - 0 - 0 99 +1 14584 14593 14724 138 129 -4.72 0 0 - 0 - - 99 +1 14725 14743 14922 195 177 -8.57 0 0 - - - - 99 -2 15064 14992 14831 231 159 -10.67 0 - - 0 - 0 99 +3 14799 14937 15071 270 132 -2.46 0 - 0 0 - - 99 +2 14915 14930 15169 252 237 -4.97 0 - 0 - - - 99 +3 15072 15096 15428 354 330 2.50 0 - - 0 - - 99 0033 -3 15494 15476 14274 1218 1200 14.07 99 - - - - - 99 +1 15112 15352 15498 384 144 -7.33 0 0 - - - - 99 0034 -1 15690 15657 15514 174 141 10.52 99 0 - - 99 - -