Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QROP010000071.1147.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QROP010000071.1147.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_QROP010000071.1147.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QROP010000071.1147.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 354 378 560 204 180 -2.69 0 99 - 0 - - - -1 705 651 526 177 123 0.71 0 99 - - 0 - - +2 743 746 868 123 120 -6.70 0 99 0 - - - - -2 1306 976 773 531 201 -2.53 0 99 - - - 0 - +2 1163 1208 1357 192 147 -9.31 0 99 0 - - - - -3 1529 1508 1326 201 180 -2.17 0 99 - - - - 0 -1 1539 1539 1390 147 147 4.26 0 99 - - 0 - - -1 1959 1884 1540 417 342 2.87 0 99 - - 0 - - +2 1826 1844 1972 144 126 -5.64 0 99 0 - - - - 0001 +1 313 364 1980 1665 1614 11.22 99 99 - - - - - 0002 -2 2122 2089 1952 168 135 -0.24 99 - - - - 99 - 0003 +1 2134 2158 2373 237 213 -2.54 99 99 - - - - - 0004 -1 2727 2673 2545 180 126 2.81 99 - - - 99 - - -2 2893 2818 2648 243 168 3.40 0 - 99 - - 0 - 0005 +2 2561 2573 3049 486 474 4.65 99 - 99 - - - - 0006 -1 3189 3168 2947 240 219 4.18 99 - - - 99 - - 0007 -2 3409 3346 3218 189 126 -6.18 99 - - - - 99 - 0008 +3 3264 3288 3413 147 123 -2.03 95 - - 95 - 4 - -3 3704 3653 3507 195 144 1.20 0 - - 99 - - 0 -3 3941 3878 3741 198 135 -3.88 0 - - 99 - 0 0 +2 3767 3833 3958 189 123 -0.06 0 0 0 99 - 0 - -2 3970 3907 3650 318 255 -0.25 0 - - 99 - 0 - -2 4444 4444 4250 192 192 0.87 0 - - 99 - 0 - -2 4606 4606 4481 123 123 -10.66 0 - - 99 - 0 - 0009 +3 3501 3504 4922 1419 1416 7.99 99 - - 99 - - - 0010 +1 4897 4912 5079 180 165 7.74 99 99 - - - - - 0011 +3 5376 5376 5561 183 183 -0.22 99 - - 99 - - - 0012 +2 5507 5516 5788 279 270 4.89 99 - 99 - - - - 0013 -1 6027 5958 5785 240 171 -3.44 99 - - - 99 - - -2 6073 6055 5906 165 147 1.15 4 - 95 - - 4 - -1 6195 6192 6028 165 162 -10.45 0 - 99 - 0 - - +3 6405 6468 6590 183 120 -9.53 0 0 99 0 - 0 - -2 6634 6625 6299 333 324 1.75 0 - 99 - - 0 - +1 6472 6517 6660 186 141 -7.86 0 0 99 - - - - -1 6885 6885 6727 156 156 -2.94 0 - 99 - 0 - - -2 7075 7048 6854 219 192 3.19 0 - 99 - - 0 - 0014 +2 5846 5849 7135 1287 1284 5.26 99 - 99 - - - - 0015 -3 7382 7277 7107 273 168 0.22 95 4 - - - - 95 +3 7434 7518 7652 216 132 -8.45 0 99 - 0 0 - 0 -3 7652 7550 7386 264 162 -3.81 0 99 - - 0 - 0 -1 7854 7779 7249 603 528 1.82 0 99 - - 0 - - -1 8217 8124 7855 360 267 1.46 0 99 - - 0 - - 0016 +1 6928 7219 8259 1329 1038 6.76 99 99 - - - - - -3 8387 8120 7995 390 123 -10.13 0 99 - 0 0 0 0 +2 8282 8300 8455 171 153 -5.10 0 99 0 0 - - - +2 8603 8609 8755 150 144 -11.62 0 99 0 - - - - -3 8885 8813 8628 255 183 -13.21 0 99 - - - - 0 -2 9022 8998 8825 195 171 -12.46 0 99 - - 0 0 - -1 9171 9105 8803 366 300 2.91 0 99 - - 0 - - -3 9314 9257 9102 210 153 -2.71 0 99 - - - - 0 0017 +1 8272 8440 9468 1194 1026 10.84 99 99 - - - - - +3 9126 9408 9539 411 129 -1.15 0 - - 0 99 - - 0018 -1 9549 9537 9331 216 204 3.94 99 - - 0 99 - - 0019 +2 9479 9479 9628 147 147 -3.98 99 - 99 - - - - 0020 -2 9826 9715 9590 234 123 -1.82 99 - - - 0 99 - 0021 -3 9842 9737 9600 240 135 -4.21 59 - - - - 40 59 -1 9849 9843 9712 135 129 -6.78 0 - - - 0 - 99 0022 -3 10052 10031 9906 144 123 0.46 99 - - - - - 99 +1 9952 9997 10164 210 165 5.70 0 0 - 0 99 - - +3 9936 10074 10220 282 144 -0.34 0 - - 0 99 - 0 -3 10244 10181 10053 189 126 0.22 0 - - 0 99 - 0 +2 10466 10511 10645 177 132 -7.70 0 0 0 - 99 - - +1 10165 10321 10827 660 504 2.92 0 0 - - 99 - - +2 10646 10658 10849 201 189 -9.15 0 - 0 - 99 - - +3 10860 10887 11051 189 162 -3.06 0 0 - 0 99 - - +1 10828 10846 11064 234 216 4.62 0 0 - - 99 - - 0023 -1 11151 11142 9994 1155 1146 12.53 99 - - - 99 - - 0024 -2 11299 11245 11120 177 123 -4.12 99 - - - - 99 - 0025 +3 11145 11166 11588 441 420 4.38 99 - - 99 - - - -2 11617 11503 11333 282 168 -7.89 0 - - 0 - 0 99 +1 11578 11629 11772 192 141 -5.38 0 0 - 0 - - 99 +3 11589 11898 12134 543 234 5.90 0 - - 0 - - 99 0026 -3 12278 12206 11211 1065 993 9.70 99 - - - - - 99 +3 12216 12240 12368 150 126 -8.15 0 - - 0 - 99 - +3 12576 12591 12713 135 120 -9.72 0 0 0 0 - 99 - -1 12864 12849 12682 180 165 -11.53 0 - 0 - 0 99 - +2 12275 12332 12868 591 534 1.72 0 - 0 - - 99 - +3 12714 12729 12887 171 156 -6.19 0 - - 0 - 99 - +1 12769 12775 12948 177 171 -7.77 0 0 - - - 99 - -1 13329 13314 13078 249 234 -1.38 0 - 0 - 0 99 - +2 12869 12869 13366 495 495 4.00 0 - 0 - - 99 - 0027 -2 13402 13399 12212 1188 1185 7.27 99 - - - - 99 - +1 13105 13387 13509 402 120 -6.64 6 6 93 - - - - +2 13391 13451 13585 192 132 -5.79 0 - 0 0 - - 99 +3 13455 13557 13826 369 267 3.25 0 - - 0 - - 99 -2 13858 13840 13676 180 162 -5.54 0 - - - - 0 99 +1 13843 13894 14028 183 132 -9.14 0 0 - 0 - - 99 -2 14086 14059 13934 150 123 -9.09 0 - - 0 - 0 99 +3 13827 13968 14144 315 174 4.68 0 - - 0 - - 99 0028 -3 14156 14153 13419 735 732 10.68 99 - - - - - 99 0029 +1 14038 14053 14247 207 192 0.07 99 99 - - - - - 0030 -1 14280 14253 14128 150 123 2.38 99 - - - 99 - - 0031 +3 14205 14217 14345 138 126 -0.93 99 - - 99 - - - 0032 -3 14378 14360 14232 144 126 4.65 99 - - - - - 99 0033 -3 14543 14534 14379 162 153 1.87 96 - 3 - - - 96 0034 +2 14243 14261 14554 309 291 -0.54 99 - 99 - - - - 0035 +3 14412 14424 14558 144 132 -5.41 99 - - 99 - - - -1 15297 15285 15160 135 123 -8.89 0 - 72 - 0 27 - 0036 +2 14723 14756 15322 597 564 4.29 99 - 99 - - - - 0037 -2 15370 15334 14765 603 567 6.03 99 - - - - 99 - -2 15742 15703 15503 237 198 -0.74 0 - 99 - - 0 0 -3 15749 15749 15486 261 261 -6.78 0 - 99 - - - 0 -1 16035 16008 15880 153 126 -4.80 0 - 99 - 0 0 - +3 16137 16179 16307 168 126 -14.03 0 - 99 0 - 0 - 0038 +2 15368 15386 16444 1074 1056 8.80 99 - 99 - - - - -2 16477 16300 15851 624 447 4.69 0 - 99 - - 0 - +2 16445 16523 16726 279 201 -6.66 0 - 0 99 - 0 - -2 16837 16657 16481 354 174 -1.35 0 - 0 99 - 0 - -1 16911 16887 16750 159 135 -9.21 0 - - 99 0 - - -2 17032 16972 16844 186 126 2.49 0 - 0 99 - 0 - +2 16799 16886 17071 270 183 -1.21 0 - 0 99 - - - -3 17159 17132 16938 219 192 4.73 0 - - 99 - - 0 0039 +3 16485 16497 17186 699 687 11.53 99 - - 99 - - - -1 17559 17529 17392 165 135 -5.65 0 - 99 - 0 - - +1 17398 17455 17604 204 147 -7.90 0 0 99 - - 0 - 0040 +2 17270 17288 17608 336 318 8.54 99 - 99 - - - - 0041 -2 17635 17632 17453 180 177 0.56 99 - - - - 99 - -3 17642 17639 17472 168 165 -5.34 0 - - - - 99 0 +1 17716 17725 17868 150 141 -9.03 0 0 - 99 - - 0 -3 18224 18122 17865 357 255 3.90 0 - - 99 - - 0 0042 +3 17658 17670 18434 774 762 10.56 99 - - 99 - - - -3 18479 18428 18225 252 201 4.99 0 - - 99 - - 0 +1 18634 18673 19020 384 345 4.20 0 0 - - 99 - - +2 19067 19082 19234 165 150 0.10 0 - 0 - 99 - - +1 19129 19171 19431 300 258 -2.53 0 0 - - 99 - - 0043 -1 19581 19569 18523 1056 1044 11.03 99 - - - 99 - - +2 19586 19781 19903 315 120 -14.16 0 0 0 - 99 - 0 -3 19985 19907 19773 210 132 -9.26 0 0 - - 99 - 0 +2 19955 19973 20095 138 120 0.07 0 0 0 - 99 - - +2 20096 20114 20293 195 177 -5.68 0 - 0 - 99 - - -3 20435 20363 20202 231 159 -6.74 0 0 - - 99 - 0 -2 20443 20416 20282 159 132 -10.71 0 0 - 0 99 0 0 +3 20286 20301 20540 252 237 -4.97 0 0 - 0 99 - - +1 20170 20467 20799 627 330 2.02 0 0 - - 99 - - 0044 -1 20859 20847 19645 1212 1200 7.59 99 - - - 99 - - +2 20483 20723 20863 378 138 -4.87 0 - 0 - 99 - - 0045 -2 21139 21097 20954 183 141 6.20 83 - 16 - - 83 - -1 21138 21129 20995 141 132 -9.36 0 - 74 - 0 25 -