Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_NMPZ010000171.59.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_NMPZ010000171.59.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_NMPZ010000171.59.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_NMPZ010000171.59.AOI_01 Sequence length = 21134 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -1 174 174 46 126 126 -3.06 99 - - - 99 - - +2 332 371 517 183 144 2.22 0 - 0 - - 99 - +2 518 875 1057 537 180 0.07 0 - 0 - - 99 - +2 1058 1058 1231 171 171 1.78 0 - 0 - - 99 - 0002 -2 1264 1252 146 1116 1104 7.04 99 - - - - 99 - +3 1482 1536 1706 222 168 -1.35 0 - - 0 - - 99 +3 1794 1854 1985 189 129 -3.83 0 - - 0 - - 99 +3 2013 2043 2174 159 129 4.85 0 - - 0 - - 99 0003 -3 2282 2279 1383 897 894 10.28 99 - - - - - 99 +3 2427 2490 2642 213 150 -3.01 0 - - 0 - 0 99 -2 2668 2578 2423 243 153 -6.32 0 - - 0 - 0 99 0004 -3 2801 2744 2400 399 342 6.28 99 - - - - - 99 +3 2802 2853 3029 225 174 -0.68 0 - - 0 - - 99 0005 -3 3227 3170 2817 408 351 5.27 99 - - - - - 99 +2 3524 3527 3685 159 156 -10.19 0 - 0 0 - - 99 -2 3742 3724 3599 141 123 -4.23 0 - - 0 - 0 99 +1 3616 3643 3777 159 132 -10.77 0 0 - 0 - - 99 +3 3414 3444 3917 501 471 1.34 0 - - 0 - - 99 0006 -3 4484 4484 3228 1254 1254 14.73 99 - - - - - 99 0007 +3 3918 4293 4496 576 201 -2.82 99 - - 99 - - - -1 4782 4689 4558 222 129 -7.13 0 - 0 - 0 99 - +2 4529 4640 4798 267 156 -4.91 0 - 0 - - 99 - +3 4803 4842 5000 195 156 -4.85 0 - 0 0 - 99 - +1 5152 5182 5319 165 135 -4.46 0 0 0 - - 99 - -1 5406 5361 5188 216 171 -6.91 0 - 0 - 0 99 - -1 5538 5529 5407 129 120 -12.81 0 - 0 - 0 99 - -1 5718 5709 5572 144 135 -2.65 0 - 0 - 0 99 - 0008 +2 4799 4916 5863 1062 945 -2.36 0 - 0 - - 99 - 0009 -2 6280 6262 4505 1773 1755 9.58 99 - - - - 99 - +3 6114 6144 6284 168 138 2.25 5 - - 5 - 94 - -1 6717 6711 6574 141 135 -11.71 0 - - - 0 99 - +3 6744 6765 6920 174 153 -16.81 0 - 0 0 - 99 - +2 6683 6779 7339 654 558 0.46 0 - 0 - - 99 - +3 7098 7173 7400 300 225 -5.48 0 - - 0 - 99 - -1 7515 7491 7351 162 138 -7.47 0 - 0 - 0 99 - -1 7758 7641 7516 240 123 -9.57 0 - - - 0 99 - -1 8367 8364 8215 150 147 -7.95 0 - 0 - 0 99 - +2 7655 8114 8413 756 297 1.62 0 - 0 - - 99 - -1 8532 8493 8371 159 120 -0.93 0 - - - 0 99 - -1 8865 8850 8716 147 132 -8.88 0 - 0 - 0 99 - 0010 +2 8447 8540 9289 840 747 1.22 0 - 0 - - 99 - 0011 -2 9562 9466 6281 3279 3183 10.17 99 - - - - 99 - 0012 +2 9860 9863 9997 135 132 -0.16 99 - 99 - - - - +1 9916 10018 10149 231 129 -2.16 0 0 0 - - - 99 +2 9998 10082 10249 249 165 -3.91 0 - 0 0 - 0 99 -2 10360 10228 10046 312 180 -5.64 0 - 0 0 - 0 99 +3 10035 10146 10658 621 510 3.04 0 - - 0 - - 99 -1 10749 10734 10576 171 156 -4.77 0 - - - 0 - 99 +1 10639 10705 10860 219 153 -8.68 0 0 - - - - 99 +2 10853 10904 11044 189 138 -3.91 0 - 0 0 - - 99 +3 10821 10839 11057 234 216 3.49 0 - - 0 - - 99 0013 -3 11162 11135 9987 1173 1146 12.84 99 - - - - - 99 -1 11535 11499 11341 192 156 -13.84 0 - 0 - 0 99 - +3 11595 11694 11840 243 144 -18.65 0 0 0 0 - 99 - 0014 +2 11216 11405 12055 837 648 0.05 0 - 0 - - 99 - 0015 -2 12286 12214 11219 1065 993 10.81 99 - - - - 99 - -3 12437 12422 12279 156 141 -12.95 0 0 - - 99 - 0 +2 12584 12599 12721 135 120 -17.95 0 0 0 0 99 - - +2 12722 12737 12895 171 156 -9.58 0 0 0 - 99 - - 0016 +1 12283 12283 13302 1017 1017 -0.75 0 0 - - 99 - - 0017 -1 13335 13335 12220 1113 1113 7.47 99 - - - 99 - - +1 13327 13387 13671 342 282 2.90 0 0 - - 99 - - +2 13637 13658 13786 147 126 -0.48 0 - 0 - 99 - - +2 13787 13787 13972 183 183 -11.67 0 0 0 - 99 - - -3 14075 14039 13884 189 153 -14.54 0 0 - - 99 - 0 +1 13672 13762 14091 417 327 2.55 0 0 - - 99 - - +2 13982 13997 14122 138 123 -10.84 0 - 0 - 99 - - 0018 -1 14229 14199 13363 864 834 10.07 99 - - - 99 - - 0019 +3 14082 14088 14300 216 210 -5.11 99 - - 99 - - - 0020 -3 14432 14423 14268 162 153 5.09 99 - 0 - - - 99 0021 +3 14301 14313 14447 144 132 -9.01 99 - - 99 - - - -3 14717 14711 14580 135 129 -4.83 0 99 - - - - 0 +2 14768 14771 14893 123 120 -10.16 0 99 0 - 0 - - 0022 +1 14542 14548 15210 666 660 12.62 99 99 - - - - - 0023 -1 15258 15249 14653 603 594 0.98 99 - - - 99 - - -1 15630 15630 15331 297 297 -0.82 0 99 - - 0 - - -2 15637 15607 15374 261 231 -8.47 0 99 - - 0 0 - -3 15953 15896 15768 183 126 -8.75 0 99 - - 0 - 0 +2 15782 15803 16021 237 216 -12.76 0 99 0 - 0 - - -1 16128 16080 15739 387 339 0.76 0 99 - - 0 - - -3 16145 16124 15954 189 168 -8.07 0 99 - 0 0 - 0 0024 +1 15256 15274 16332 1074 1056 10.17 99 99 - - - - - 0025 -3 16463 16445 16323 138 120 -4.95 99 - - - - - 99 -3 16868 16859 16686 180 171 -0.48 0 99 - 0 0 - 0 +3 16638 16728 17015 375 285 -9.65 0 99 - 0 0 - - -1 17022 17010 16666 354 342 3.22 0 99 - 0 0 - - 0026 +1 16333 16339 17028 693 687 9.34 99 99 - - - - - 0027 -3 17189 17183 17007 180 174 -2.95 99 - - - - - 99 +3 17049 17067 17201 150 132 -5.13 0 - - 0 99 - - -3 17402 17372 17235 165 135 -6.87 0 99 - - 0 - 0 0028 +1 17113 17131 17451 336 318 9.88 99 99 - - 0 - - -1 17646 17646 17509 135 135 -5.34 0 - 99 - 0 0 - +3 17529 17532 17741 210 207 -9.27 0 - 99 0 - 0 - 0029 -2 17785 17782 17498 285 282 0.66 99 - - - - 99 - -1 18054 18045 17857 195 186 -9.96 0 - 99 - 0 0 - 0030 +2 17513 17525 18289 774 762 9.40 99 - 99 - - - - -2 18337 17977 17786 549 189 2.53 0 - 99 - - 0 - 0031 +2 18296 18326 18457 159 129 -3.26 99 - 99 - - - - -3 18572 18560 18417 153 141 -6.92 0 0 - - 99 - 0 +1 18364 18538 19032 666 492 2.60 0 0 - - 99 - - +2 18932 18932 19066 132 132 -2.82 0 - 0 - 99 - - +1 19033 19228 19368 333 138 0.55 0 0 - 0 99 - - +3 19227 19260 19388 159 126 -5.26 0 - - 0 99 - - 0032 -1 19446 19443 18388 1056 1053 11.90 99 - - - 99 - - 0033 +1 19369 19372 19512 141 138 0.18 99 99 - - - - - +3 19518 19695 19832 312 135 -17.40 0 - 0 0 0 99 - -1 19971 19785 19648 321 135 -14.62 0 - 0 0 0 99 - 0034 +2 19562 19568 20059 495 489 2.07 99 - 99 - - - - +3 19884 19968 20222 336 252 -2.29 0 - - 0 - 99 - -1 20364 20304 20164 198 138 -9.76 0 - - - 0 99 - +2 20174 20237 20371 195 132 -6.08 0 0 0 - - 99 0 -3 20459 20345 20211 246 132 -18.31 0 0 0 - 0 99 0 +1 20215 20230 20469 252 237 -4.24 0 0 - - - 99 - +2 20372 20408 20728 354 318 0.47 0 - 0 - - 99 - +3 20511 20652 20792 279 138 -8.69 0 - - 0 - 99 - 0035 -2 20794 20776 19574 1218 1200 15.83 99 - - - - 99 - 0036 -1 21132 21012 20815 315 195 13.61 99 0 - - 99 - -