Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_GG7038541.19.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_GG7038541.19.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_GG7038541.19.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_GG7038541.19.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 311 257 132 177 123 -0.38 0 - - 99 - - 0 +1 757 766 891 132 123 -9.44 0 0 - 99 0 - - -1 912 582 379 531 201 -2.80 0 - - 99 0 - - +2 803 842 1060 255 216 -6.91 0 - 0 99 - - - -2 1135 1114 932 201 180 -3.79 0 - - 99 - 0 - -3 1565 1565 1146 417 417 2.19 0 - - 99 - - 0 +1 1432 1450 1578 144 126 -6.14 0 0 - 99 - - - 0001 +3 3 12 1586 1581 1572 12.14 99 - - 99 - - - -2 1768 1723 1583 183 138 -7.35 11 - - 88 - 11 - 0002 +3 1587 1647 1772 183 123 -5.98 19 - - 19 - 80 - -1 2064 2046 1867 195 177 1.02 0 99 - - 0 - - -1 2301 2238 2101 198 135 -6.64 0 99 0 - 0 - 0 +3 2127 2193 2318 189 123 -0.87 0 99 0 0 - - 0 +2 2105 2171 2323 216 150 -14.42 0 99 0 - - - 0 -3 2330 2180 2010 318 168 -0.06 0 99 - - - - 0 -3 2804 2804 2610 192 192 -1.03 0 99 - - - - 0 -3 2966 2966 2841 123 123 -7.34 0 99 0 - 0 - 0 +2 2798 2849 3004 204 153 -7.20 0 99 0 - 0 - - +3 2919 2925 3062 141 135 -8.55 0 99 - 0 0 - - -1 3132 2970 2812 318 156 -0.08 0 99 0 - 0 - - 0003 +1 1861 1864 3282 1419 1416 7.69 99 99 - - - - - 0004 +2 3257 3272 3439 180 165 8.44 99 - 99 - - - - 0005 +1 3775 3799 4014 237 213 -3.39 99 99 - - - - - 0006 -1 4368 4278 4078 288 198 0.74 99 - - - 99 - - -2 4528 4453 4289 237 162 1.44 0 - 99 - - 0 - +1 4471 4477 4602 129 123 -6.62 0 0 99 - - - - 0007 +2 4202 4214 4684 480 468 3.71 99 - 99 - - - - -1 4692 4641 4519 171 120 -2.16 0 - 99 - 0 - - 0008 +3 4833 4869 5180 345 309 4.38 99 - - 99 - - - 0009 -2 5419 5350 5177 240 171 -3.93 99 - - - - 99 - -3 5495 5480 5325 168 153 -1.04 0 0 - 99 - - 0 -2 5587 5584 5420 165 162 -11.50 0 - 0 99 - 0 - +1 5797 5860 5982 183 120 -10.39 0 0 0 99 - - 0 -3 6026 6017 5691 333 324 1.69 0 - - 99 - - 0 +2 5864 5969 6127 261 156 -9.61 0 - 0 99 0 - - -2 6277 6277 6119 156 156 -2.26 0 - - 99 - 0 - -1 6387 6381 6232 153 147 -8.28 0 - - 99 0 - - -3 6467 6440 6246 219 192 3.30 0 - - 99 - - 0 0010 +3 5238 5241 6527 1287 1284 9.89 99 - - 99 - - - 0011 +2 6320 6491 6673 351 180 -0.12 99 - 99 - - - - -3 7043 6941 6777 264 162 -2.55 0 99 - - 0 - 0 0012 -1 7245 7170 6499 744 669 2.19 99 - - - 99 - - -1 7608 7515 7246 360 267 0.76 0 99 - - 0 - - -3 7646 7511 7386 258 123 -9.05 0 99 - 0 0 0 0 0013 +1 6667 6688 7650 981 960 7.85 99 99 - - - - - +3 7674 7680 7847 171 165 -4.29 0 0 99 0 - - - -1 8292 8283 8131 159 150 -10.75 0 - 98 - 0 1 - -2 8536 8497 8093 441 402 3.64 0 - 99 - - 0 - -1 8634 8619 8467 165 150 -6.59 0 - 99 - 0 - - -2 8881 8803 8537 342 264 4.29 0 - 99 - - 0 - 0014 +2 7583 7832 8899 1314 1065 6.85 99 - 99 - - - - 0015 -1 8949 8949 8794 153 153 -3.34 99 - - - 99 - - 0016 -2 9286 9259 8918 366 339 4.00 99 - 0 - - 99 - -1 9330 9303 9082 246 219 -5.95 0 - 99 - 0 - - 0017 +2 8900 9185 9334 432 147 1.43 99 - 99 - 0 - - 0018 -2 9826 9715 9578 246 135 -1.90 99 - - - - 99 - 0019 -3 9842 9737 9600 240 135 -2.24 99 - - - - 0 99 -1 9849 9843 9712 135 129 -8.47 0 - - - 0 - 99 0020 -3 10052 10031 9906 144 123 0.18 99 - - - - - 99 +1 9952 9997 10164 210 165 3.14 0 0 - - 99 - - +3 10029 10074 10220 189 144 -2.19 0 - - 0 99 - 0 -3 10244 10181 10053 189 126 -0.61 0 - - 0 99 - 0 +3 10272 10311 10469 195 156 -3.58 0 0 - 0 99 - - +2 10490 10511 10645 153 132 -11.36 0 0 0 - 99 - - +1 10165 10321 10827 660 504 2.32 0 0 - - 99 - - +2 10646 10658 10849 201 189 -8.98 0 - 0 - 99 - - +3 10860 10911 11051 189 138 -4.51 0 0 - 0 99 - - +1 10828 10846 11064 234 216 4.05 0 0 - - 99 - - 0021 -1 11154 11142 9994 1158 1146 12.11 99 - - - 99 - - +1 11296 11494 11685 387 189 2.60 0 0 - - 99 - 0 -3 11714 11600 11430 282 168 -7.77 0 0 - - 99 - 0 +2 11675 11726 11869 192 141 -4.00 0 0 0 - 99 - - +1 11686 11995 12231 543 234 5.29 0 0 - - 99 - - 0022 -1 12375 12303 11308 1065 993 10.65 99 - - - 99 - - +1 12313 12334 12465 150 129 -4.85 0 0 - - - - 99 +1 12673 12688 12810 135 120 -11.93 0 0 0 20 - - 79 -2 12961 12946 12779 180 165 -11.72 0 - - 0 - 0 99 +3 12372 12570 12965 591 393 2.09 0 - - 0 - - 99 +1 12811 12826 12984 171 156 -5.36 0 0 - - - - 99 +2 12866 12872 13045 177 171 -8.43 0 - 0 - - - 99 -2 13426 13411 13175 249 234 -2.06 0 - - 0 - 0 99 +3 12966 13194 13463 495 267 3.30 0 - - 0 - - 99 0023 -3 13499 13496 12309 1188 1185 6.29 99 - - - - - 99 -3 13955 13886 13755 198 129 -7.40 0 0 - - 99 - 0 +2 13940 13991 14125 183 132 -9.25 0 0 0 - 99 - - -3 14183 14156 14031 150 123 -10.05 0 0 - - 99 - 0 0024 +1 13324 13537 14241 915 702 2.59 0 0 - - 99 - - 0025 -1 14253 14187 13516 735 669 7.05 99 0 - - 99 - - 0026 +2 14135 14150 14332 195 180 -0.13 99 - 99 - - - - 0027 -2 14476 14428 14225 249 201 3.42 99 - - - - 99 - 0028 +1 14341 14359 14562 219 201 1.52 99 99 - - - - - 0029 -2 14641 14632 14477 162 153 4.18 99 - - - - 99 - 0030 +2 14510 14522 14656 144 132 -4.17 99 - 99 - - - - -2 15025 15013 14873 150 138 -9.98 0 99 - - 0 0 - -3 15395 15383 15258 135 123 -8.93 0 94 - - 5 - 0 0031 +1 14821 14854 15420 597 564 7.80 99 99 - - - - - 0032 -1 15468 15432 14863 603 567 6.41 99 - - - 99 - - -1 15840 15840 15601 237 237 -2.79 0 99 - - 0 0 - -2 15847 15847 15584 261 261 -6.73 0 99 - - - 0 - -3 16133 16106 15978 153 126 -4.67 0 99 - - 0 - 0 +2 15992 16025 16231 237 204 -9.48 0 99 0 - 0 - - +2 16235 16277 16405 168 126 -14.33 0 99 0 0 0 - - 0033 +1 15466 15484 16542 1074 1056 9.83 99 99 - - - - - -1 16575 16398 15949 624 447 3.61 0 99 - - 0 - - -1 16935 16755 16576 357 177 -1.84 0 - 99 - 0 - - -3 17009 16985 16848 159 135 -8.55 0 - 99 - - - 0 -1 17130 17070 16942 186 126 0.69 0 0 99 - 0 - - +1 16897 16984 17142 243 156 -2.97 0 0 99 - - - - -2 17257 17230 17036 219 192 4.62 0 - 99 0 - 0 - 0034 +2 16448 16595 17284 834 687 11.08 99 - 99 - - - - -3 17657 17627 17490 165 135 -6.03 0 99 - 0 - - 0 +3 17439 17553 17702 261 147 -8.49 0 99 - 0 0 - - 0035 +1 17368 17386 17706 336 318 8.47 99 99 - - - - - 0036 -1 17733 17730 17551 180 177 2.31 99 - - - 99 - - -2 17740 17737 17570 168 165 -7.41 0 - - - 99 0 - +3 17814 17823 17966 150 141 -9.24 0 - 99 0 - 0 - 0037 +2 17756 17768 18532 774 762 9.53 99 - 99 - - - - -2 18553 18220 17963 588 255 3.68 0 - 99 - - 0 - +3 18777 18822 19169 390 345 2.86 0 - - 0 - - 99 +1 19216 19258 19383 165 123 1.67 0 0 - - - - 99 +3 19278 19320 19580 300 258 -1.76 0 - - 0 - - 99 0038 -3 19763 19763 18672 1089 1089 10.52 99 - - - - - 99 +2 19745 19940 20062 315 120 -15.05 0 0 0 - 99 - 0 -3 20201 20066 19932 267 132 -8.20 0 0 - - 99 - 0 +2 20114 20132 20254 138 120 -0.71 0 0 0 - 99 - - +2 20255 20273 20452 195 177 -7.32 0 - 0 - 99 - - -3 20594 20522 20361 231 159 -9.69 0 0 - - 99 - 0 -2 20602 20575 20441 159 132 -12.58 0 0 - 0 99 0 0 +3 20445 20460 20699 252 237 -4.69 0 0 - 0 99 - - +1 20329 20638 20763 432 123 4.02 0 0 0 - 99 - - +1 20764 20827 20958 192 129 0.20 0 0 0 - 99 - - +2 20642 20882 21022 378 138 -6.05 0 - 0 - 99 - - 0039 -1 21024 21006 19804 1218 1200 14.11 99 - - - 99 - -