{
"AOIs": [ 
{
"name": "NZ_JVYX010002601.326.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Prevotellaceae/Prevotella_buccae/GCF_000162455.1_ASM16245v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00004",
"orfname": "orf00004",
"gene_start": 636,
"gene_end": 773,
"gene_strand": "-",
"real_start": 637,
"real_end": 774 ,
"real_strand": "-",
"name": "orf00004",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     15.4733142982649,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MSTAGGQHATTILCCHSGAEAVLVHTTAIVGLKCSFHCFYLIFML",
"dna":"ATGAGCACGGCGGGAGGCCAGCACGCGACGACCATTCTTTGTTGCCATTCTGGCGCGGAAGCCGTGCTTGTTCACACGACGGCGATTGTGGGGCTGAAATGTTCTTTTCATTGCTTTTATCTTATTTTTATGTTA",
"points": [{"x":13.9688117724577,"y":1},{"x":14.3688117724577,"y":2},{"x":16.977816824072,"y":2},{"x":16.977816824072,"y":0},{"x":14.3688117724577,"y":0}]}
,{
"name": "orf00006",
"orfname": "orf00006",
"gene_start": 925,
"gene_end": 1704,
"gene_strand": "+",
"real_start": 926,
"real_end": 1705 ,
"real_strand": "+",
"name": "orf00006",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     28.8710740171316,
"motifs":    "PF00069",
"function":  "Serine/threonine-protein kinase PK-1 OS=Streptomyces toyocaensis OX=55952 GN=spk1 PE=1 SV=1",
"annotation":"Species='-'<br>match=28.966%|Evalue=9.60e-08<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q9KIG4|PK1_STRTO>sp|Q9KIG4|PK1_STRTO</a>",
"protein":"MKASEFINKFKSSYLWGNLVAMGLVVVLICLGVKYGIDLYTHHGESIPIPNVLHKSFDDASRILDDAGLQVVVSDTGYVKTLPPNCILEQSPAPGERVKSGHVIRVTINASHTPTLTIPDVIDNSSMREAMAKLSAMGFKLGEPQFVPGEQDWVYGILVRGRHVVAGDKVSIEDKLIIQVGNGRRDAADSVDYIDPVFEENGAGTESGDDSFEEVTGPEPAESAPESSGQSGHAPSPRPSAQAGGHSSSQHQSSTEVVE",
"dna":"ATGAAAGCGTCCGAGTTCATCAACAAGTTTAAAAGCAGCTATTTGTGGGGCAATCTTGTCGCCATGGGGCTTGTCGTGGTGCTGATTTGCTTGGGAGTGAAATATGGCATAGACCTCTACACGCATCATGGAGAGTCGATTCCCATACCCAATGTGTTGCACAAGTCGTTCGATGACGCAAGCCGCATTCTTGACGATGCCGGGCTTCAAGTTGTGGTGAGCGACACGGGATATGTGAAGACACTGCCCCCCAACTGCATTCTTGAGCAGTCGCCAGCCCCGGGGGAGCGGGTCAAGTCGGGGCATGTGATTCGCGTGACGATCAATGCCTCCCACACTCCCACGCTCACCATCCCCGATGTCATTGACAACAGTTCGATGCGCGAGGCCATGGCCAAGTTGTCGGCGATGGGATTCAAGTTGGGCGAGCCGCAGTTCGTCCCCGGAGAGCAAGACTGGGTCTATGGCATACTGGTGCGTGGGCGGCATGTTGTTGCGGGCGACAAGGTGTCGATAGAAGACAAACTCATCATACAGGTGGGCAATGGCCGGCGCGATGCCGCCGACTCGGTGGACTATATAGATCCCGTGTTTGAAGAAAATGGGGCGGGCACCGAGTCAGGCGATGATAGCTTTGAAGAAGTGACAGGCCCCGAACCGGCAGAATCTGCCCCCGAATCTTCGGGACAGTCAGGCCACGCCCCGTCGCCCCGGCCGTCGGCTCAGGCAGGTGGACACTCCTCTTCACAGCACCAATCATCAACCGAAGTAGTAGAA",
"points": [{"x":20.3162749835273,"y":0},{"x":20.3162749835273,"y":2},{"x":37.0258730507358,"y":2},{"x":37.4258730507358,"y":1},{"x":37.0258730507358,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 1710,
"gene_end": 2813,
"gene_strand": "+",
"real_start": 1711,
"real_end": 2814 ,
"real_strand": "+",
"name": "orf00007",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     49.670546892159,
"motifs":    "",
"function":  "Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1",
"annotation":"Species='-'<br>match=44.615%|Evalue=4.77e-95<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|O50310|Y723_CHLP8>sp|O50310|Y723_CHLP8</a>",
"protein":"MAESFDNDELEDIDLDGGISADSGDDGDGQLYEHWKIEVDAGQAPVRIDKFLTEKNPHQSRNRIQSAADAGFIRVNGRPVKSNYKVRPGDVVTLMLDRPKHDTSIVPEDIPLAVVYEDDGLMVINKPAGMVVHPGAGNFTGTLINAVAYYLKDLPTFDANSPEVGLVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTTHRSYNALVWGNIVDDEGRIEGNIARDPRNRLRMKVFAPGSGIGKSAVTHYRVLERFGYTTLVECRLETGRTHQIRAHMKHIGHPLFGDETYGGTEILRGQRSSTYKAFIQNCFKLCPRQALHARTLGFVHPVSGRQMDFSSEWPADFAALIDKWRAFIKGTTQDTFEQ",
"dna":"ATGGCAGAATCCTTTGACAACGACGAATTGGAAGACATCGACCTCGATGGCGGCATTTCGGCCGACAGCGGTGACGACGGCGACGGGCAACTCTACGAGCATTGGAAAATCGAAGTGGATGCCGGGCAGGCTCCGGTGCGCATAGACAAGTTTCTGACCGAGAAAAATCCGCACCAGAGCCGCAACCGCATACAGAGTGCAGCCGATGCCGGTTTCATCCGTGTCAACGGCCGGCCGGTGAAGAGTAATTATAAGGTGAGGCCCGGAGATGTTGTCACGCTGATGCTCGACCGTCCCAAACACGACACAAGCATCGTGCCCGAAGACATACCGCTTGCCGTGGTCTATGAAGACGATGGACTGATGGTGATCAACAAGCCTGCGGGGATGGTCGTCCATCCCGGTGCCGGCAACTTCACGGGCACGCTTATCAACGCGGTCGCCTACTATCTGAAAGACCTTCCCACGTTTGATGCCAACAGTCCCGAGGTGGGATTGGTACACCGCATCGACAAAGACACCAGCGGACTGCTGGTGGTGGCCAAAACCCCTGAAGCCAAGACTTGCCTCGGCAAGCAGTTCTTCAACAAGACCACCCATCGCAGCTACAACGCTCTGGTGTGGGGCAACATCGTTGACGACGAGGGCCGGATAGAGGGCAACATAGCCCGAGATCCCCGCAACCGCCTGCGCATGAAGGTGTTCGCTCCCGGTAGTGGCATTGGCAAAAGTGCCGTCACCCACTATCGGGTGTTGGAGCGTTTCGGCTACACCACCCTTGTGGAGTGCCGGCTCGAGACCGGTCGCACCCACCAGATCAGGGCCCACATGAAGCACATCGGCCATCCGCTTTTCGGCGATGAGACTTACGGCGGCACAGAGATACTGCGCGGGCAGCGCAGCAGCACCTACAAAGCCTTCATCCAAAATTGCTTCAAACTCTGTCCCCGGCAGGCCTTGCATGCCCGCACGCTGGGCTTTGTGCATCCTGTGAGCGGCCGGCAGATGGATTTCTCCTCGGAGTGGCCGGCCGATTTTGCAGCATTGATAGACAAGTGGCGTGCCTTCATCAAGGGCACCACCCAAGATACATTTGAACAA",
"points": [{"x":37.5576542938722,"y":0},{"x":37.5576542938722,"y":2},{"x":61.3834394904459,"y":2},{"x":61.7834394904459,"y":1},{"x":61.3834394904459,"y":0}]}
,{
"name": "orf00010",
"orfname": "orf00010",
"gene_start": 2836,
"gene_end": 3831,
"gene_strand": "+",
"real_start": 2837,
"real_end": 3832 ,
"real_strand": "+",
"name": "orf00010",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     73.215462332528,
"motifs":    "",
"function":  "D-alanine--D-alanine ligase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) OX=272559 GN=ddl PE=3 SV=1",
"annotation":"Species='-'<br>match=59.146%|Evalue=7.57e-150<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q5LI31|DDL_BACFN>sp|Q5LI31|DDL_BACFN</a>",
"protein":"METIKRNIAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDFSFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYLRSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPALRVAFMESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEVVTSNEFFDYDAKYNGQVKEITPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMTATSFIPQQVRAAGLDIKEVLTEIVENQF",
"dna":"ATGGAAACAATCAAGAGAAATATAGCCATCGTCTGTGGTGGCGATTCGTCGGAACACGATGTCTCCCTGCGCTCGGCGCAGGGGCTGTATTCCTTCTTCGACAAGGAGCGGTATCATGTCTACATCGTCGATGTGAAAGGCACCGACTGGCATGTCAACCTTGACAACGGAGACATCGTGCCCATCGACAAAAACGACTTTTCGTTTGTGCAGGCCGGCACCACCGTCTATTTCGACTACGCCTATATCACCATTCACGGCCAGCCCGGCGAAAACGGCGTGATGCAGGGCTATTTCGACCTCATCCATCTGCCTTACTCTACCAGCGGTGTGCTTGTCGAGGCTCTTACGTTCAATAAATATGTGCTCAACAACTATCTCCGCAGCTTTGGCGTGAATGTAGCCGACAGTCTGCTGCTCCGCCGCGGTGAATCCTACGATGAGAAGGAGATAGAGCGCCGATTGGGTATGCCCTGCTTCGTGAAACCTGCCGCCGACGGCAGCAGCTTCGGCGTGAGCAAGGTGAAAGAGGCCGACCGGCTGGCTCCGGCACTCCGGGTGGCCTTCATGGAGAGCGATGAGGTGATGGTCGAGGGCTTCCTCGACGGCATGGAAATATCGCAGGGCATCTACAAAACCAAGGAAAAGACTGTGGTGTTGCCGGCCACCGAGGTGGTGACGAGCAACGAGTTTTTCGACTACGATGCCAAGTACAACGGTCAGGTGAAGGAAATCACCCCCGCCCGCCTCAGTCCCGAGACTGCTGCCAAGGTGTCTGCCGAGACCGCCCGCATCTACGAACTCCTCCATGCCAACGGCATCATCCGCATCGACTACATCATCTCCAAAGACAGCGAGGGCTGTGATGTGGTCAATATGCTTGAAATCAACACCACGCCGGGCATGACAGCCACGAGCTTCATCCCCCAGCAGGTGCGTGCTGCCGGTCTCGACATCAAAGAGGTGCTGACCGAAATCGTTGAAAATCAGTTC",
"points": [{"x":62.2886009224687,"y":0},{"x":62.2886009224687,"y":2},{"x":83.7423237425873,"y":2},{"x":84.1423237425873,"y":1},{"x":83.7423237425873,"y":0}]}
]}