{ "AOIs": [ { "name": "NZ_JRNQ010000851.333.AOI_01", "filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Prevotellaceae/Prevotella_bivia/GCF_000177315.1_ASM17731v1_genomic.fna", "color": "gray", "yline": 10, "xstart": 5, "points": [ {"x":0,"y":10}, {"x":800,"y":10} ] } ], "Genes": [ { "name": "orf00001", "orfname": "orf00001", "gene_start": 76, "gene_end": 198, "gene_strand": "+", "real_start": 4386, "real_end": 4508 , "real_strand": "-", "name": "orf00001", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 2.98865619546248, "motifs": "", "function": "", "annotation":"", "protein":"LVSSLFKYILRNLSSGMTNTFSSFSKGSVPDSSLEMTIFC", "dna":"TTGGTATCTTCTCTCTTCAAGTATATTTTGAGGAATTTATCATCTGGGATGACCAATACATTTTCATCATTTTCAAAAGGATCAGTGCCGGACAGTTCTTTAGAGATGACAATCTTTTGC", "points": [{"x":1.65794066317627,"y":0},{"x":1.65794066317627,"y":2},{"x":3.91937172774869,"y":2},{"x":4.31937172774869,"y":1},{"x":3.91937172774869,"y":0}]} ,{ "name": "sORF_1", "orfname": "sORF_1", "gene_start": 192, "gene_end": 416, "gene_strand": "+", "real_start": 4168, "real_end": 4392 , "real_strand": "-", "name": "sORF_1", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 6.63176265270506, "motifs": "RBS=TTTAGAGATGACAATCTT
", "function": "", "annotation":"", "protein":"LLICRLIYQFLRAQCFRDNFPFVDKIDFGCIFSGFFPKMCREQDTPVFAFENIPPDNLPYHRIEIGGRFIQNQQx", "dna":"TTGCTGATATGCCGACTCATTTATCAATTCCTGCGGGCTCAATGCTTTCGAGATAATTTTCCCTTCGTAGATAAAATAGATTTTGGTTGCATATTTTCCGGCTTCTTCCCAAAGATGTGTCGTGAACAGGACACCCCGGTTTTTGCTTTTGAAAATATTCCTCCAGATAACCTCCCTTATCATCGGATCGAGATCGGCGGTCGGTTCATCCAGAATCAACAATGA", "points": [{"x":4.18848167539267,"y":0},{"x":4.18848167539267,"y":2},{"x":8.67504363001745,"y":2},{"x":9.07504363001745,"y":1},{"x":8.67504363001745,"y":0}]} ,{ "name": "sORF_4", "orfname": "sORF_4", "gene_start": 230, "gene_end": 325, "gene_strand": "-", "real_start": 4259, "real_end": 4354 , "real_strand": "+", "name": "sORF_4", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 6.05366492146597, "motifs": "RBS=TCAAAAGCAAAAACCGGG
", "function": "", "annotation":"", "protein":"VSCSRHIFGKKPENMQPKSILSTKGKLSRKHx", "dna":"GTGTCCTGTTCACGACACATCTTTGGGAAGAAGCCGGAAAATATGCAACCAAAATCTATTTTATCTACGAAGGGAAAATTATCTCGAAAGCATTGA", "points": [{"x":5.0174520069808,"y":1},{"x":5.4174520069808,"y":2},{"x":7.08987783595113,"y":2},{"x":7.08987783595113,"y":0},{"x":5.4174520069808,"y":0}]} ,{ "name": "sORF_2", "orfname": "sORF_2", "gene_start": 306, "gene_end": 416, "gene_strand": "+", "real_start": 4168, "real_end": 4278 , "real_strand": "-", "name": "sORF_2", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 7.87521815008726, "motifs": "RBS=TCCGGCTTCTTCCCAAAG
", "function": "", "annotation":"", "protein":"MCREQDTPVFAFENIPPDNLPYHRIEIGGRFIQNQQx", "dna":"ATGTGTCGTGAACAGGACACCCCGGTTTTTGCTTTTGAAAATATTCCTCCAGATAACCTCCCTTATCATCGGATCGAGATCGGCGGTCGGTTCATCCAGAATCAACAATGA", "points": [{"x":6.67539267015707,"y":0},{"x":6.67539267015707,"y":2},{"x":8.67504363001745,"y":2},{"x":9.07504363001745,"y":1},{"x":8.67504363001745,"y":0}]} ,{ "name": "orf00003", "orfname": "orf00003", "gene_start": 413, "gene_end": 565, "gene_strand": "+", "real_start": 4019, "real_end": 4171 , "real_strand": "-", "name": "orf00003", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 10.6675392670157, "motifs": "", "function": "", "annotation":"", "protein":"MTGYVIRTKKWQPFFFPLLKVDKRTYSLSYLIQGNRRCLVAIPICYRFFE", "dna":"ATGACGGGTTATGTAATACGGACAAAAAAATGGCAACCCTTTTTCTTTCCCCTTTTGAAAGTTGATAAAAGAACCTATTCTTTATCTTATCTAATTCAAGGAAATCGTAGATGTCTCGTGGCAATTCCGATATGTTATAGATTCTTCGAG", "points": [{"x":9.00959860383944,"y":0},{"x":9.00959860383944,"y":2},{"x":11.925479930192,"y":2},{"x":12.325479930192,"y":1},{"x":11.925479930192,"y":0}]} ,{ "name": "orf00004", "orfname": "orf00004", "gene_start": 562, "gene_end": 813, "gene_strand": "+", "real_start": 3771, "real_end": 4022 , "real_strand": "-", "name": "orf00004", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 14.9978184991274, "motifs": "", "function": "", "annotation":"", "protein":"VNPIISLTFNMGKITGLSQSTPIFCLFWSKLPFPKNAKLPDEHFIILHNNSMNVVFPEPFCPNRATISPGLTSSDTLRRMEVP", "dna":"GTGAATCCGATTATTTCTTTGACTTTTAACATGGGGAAAATAACCGGATTATCCCAAAGCACACCAATATTCTGTTTGTTCTGGTCGAAGTTGCCTTTTCCGAAAAATGCGAAATTGCCGGATGAACATTTCATCATATTACACAACAACTCAATGAATGTTGTCTTTCCGGAACCGTTCTGTCCTAATAGAGCTACAATTTCTCCAGGATTAACTTCCAGCGATACATTGCGCAGGATGGAAGTACCC", "points": [{"x":12.260034904014,"y":0},{"x":12.260034904014,"y":2},{"x":17.3356020942408,"y":2},{"x":17.7356020942408,"y":1},{"x":17.3356020942408,"y":0}]} ,{ "name": "Cyclodehydration", "orfname": "orf00006", "gene_start": 829, "gene_end": 1713, "gene_strand": "-", "real_start": 2871, "real_end": 3755 , "real_strand": "+", "name": "Cyclodehydration", "color": "#6ba3ff", "yline": 10, "angle": -60, "xtext": 27.7268760907504, "motifs": "PF00881", "function": "Putative nitroreductase MJ1384 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1384 PE=3 SV=1", "annotation":"Species='-'
match=34.595%|Evalue=6.59e-28
UniRef:sp|Q58779|Y1384_METJA", "protein":"MKTIKSKALIASLDSGLYGAKNFGESLALIFNENVKFDKFLIRKQVESIQSFSNKYVHQRSCQPYKVFPTSKEYDLKPYLKEMPGSEKTNLFNILAKRRSGRAYSPYSISLNELALLCHYSYGISGEDFNKESEATLRFRTVPSAGALYPLELYVYLNTSVLPKGIYHYSPNKSVLEFIKEEDYMEYLRENLVAEPFVDLQHCSCVFFITSFFERVLIKYGDRGYRFILQEVGFLTQNISLLAEFLELGSCVLGSYVDDNINQILSADGTFETVQNVIVIGKNKEVQDDNVTSK", "dna":"ATGAAAACAATAAAATCAAAAGCATTAATAGCAAGCTTAGATTCAGGACTATATGGAGCTAAAAATTTTGGTGAATCGTTGGCTTTGATTTTTAACGAGAATGTGAAATTTGATAAGTTTCTGATTCGCAAACAAGTTGAAAGTATCCAAAGTTTCTCCAATAAATACGTCCACCAACGCTCGTGCCAACCGTATAAAGTGTTTCCCACCAGCAAAGAGTATGATTTGAAACCTTATCTCAAAGAGATGCCTGGTAGTGAAAAAACCAATCTATTCAATATCCTTGCTAAGCGCCGTTCCGGAAGAGCCTATTCTCCTTACTCCATTTCGCTCAACGAGCTGGCGCTACTCTGCCATTATAGCTATGGAATTAGCGGAGAAGACTTTAATAAAGAATCAGAAGCTACGTTACGATTCAGAACGGTTCCATCTGCAGGTGCCTTATATCCACTTGAATTATACGTATATTTGAATACAAGTGTATTGCCTAAAGGAATTTACCATTATAGCCCCAATAAGTCAGTTCTCGAATTCATCAAAGAAGAAGATTATATGGAATATTTAAGAGAAAATCTCGTAGCAGAACCTTTCGTGGATTTGCAACATTGTAGTTGCGTGTTCTTCATCACGTCCTTCTTTGAGAGAGTACTTATCAAATATGGCGACAGAGGCTACCGATTTATACTTCAGGAAGTTGGATTTTTAACTCAGAACATCTCGTTACTCGCCGAATTTCTCGAACTTGGCTCTTGCGTTCTGGGAAGCTACGTTGATGACAACATCAACCAGATCCTCTCTGCTGACGGAACCTTTGAAACTGTGCAAAATGTGATTGTAATTGGAAAAAACAAGGAGGTTCAAGATGACAATGTTACAAGCAAA", "points": [{"x":18.0846422338569,"y":1},{"x":18.4846422338569,"y":2},{"x":37.369109947644,"y":2},{"x":37.369109947644,"y":0},{"x":18.4846422338569,"y":0}]} ,{ "name": "LapBotD", "orfname": "orf00014", "gene_start": 1718, "gene_end": 3013, "gene_strand": "-", "real_start": 1571, "real_end": 2866 , "real_strand": "+", "name": "LapBotD", "color": "#6ba3ff", "yline": 10, "angle": -60, "xtext": 51.6034031413613, "motifs": "PF02624", "function": "Uncharacterized protein MJ1094 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1094 PE=1 SV=3", "annotation":"Species='-'
match=24.345%|Evalue=6.78e-11
UniRef:sp|Q58494|Y1094_METJA", "protein":"MDAVNNSLIKGTMLISNQFGIVNHVSKLPRLNYDPKLVSFGIWPSNTLAFGAEKYEGRSSGCNFDLQKSFMGTLGETVERYCPVFYNKENMILSSYKNLKVHAIPPSEYALFHEKQYAQENYPLHRFDENIELHWDKCMDITNGKETWVPGACIYLPWSCEKQWINVSTSTGLAAHTNWDKALLVALHEVIERDSFSLTWWQKISAPKIIIDEDISHFIHERFPASYEWHFMDITYDLGIPTVYGICFGEAEYGKFVAVGTATRDTYGEALKKVILEMGQSVSYFRYLLGEKKNWQPSENFHTLLDFEDHSILYIKKPELCEVFKIWTETKPTRKIDFLEESVRSTKENIRHITSVLKSKGYNVLVKDITTPDVNQAGFYCLRVIVPQLIQMGGAYSFYFLGGKRLYTIPQELGYKCYPFEELNVYPHPFP", "dna":"ATGGATGCAGTCAACAACTCTCTGATTAAAGGTACAATGCTGATTTCCAATCAGTTTGGAATCGTAAATCATGTATCCAAATTACCCAGGCTCAATTACGATCCTAAACTTGTAAGCTTTGGTATTTGGCCCAGCAACACTCTGGCTTTCGGAGCAGAAAAGTATGAAGGAAGAAGTAGCGGATGTAACTTTGATCTGCAAAAGTCATTTATGGGAACTTTAGGTGAAACGGTAGAAAGGTATTGCCCCGTATTCTACAATAAAGAGAATATGATCCTAAGTTCTTATAAAAATCTAAAAGTACACGCTATACCGCCCTCGGAATATGCCTTGTTCCATGAGAAGCAATATGCCCAGGAAAATTATCCTCTCCATCGGTTCGACGAGAATATCGAATTACATTGGGATAAATGCATGGATATTACTAATGGGAAAGAAACCTGGGTTCCCGGAGCATGCATCTATCTTCCCTGGTCATGTGAAAAGCAATGGATAAATGTAAGTACATCAACAGGCTTGGCAGCACATACGAATTGGGACAAGGCTTTGCTGGTTGCATTACATGAAGTCATTGAAAGAGATTCGTTTTCTCTCACTTGGTGGCAGAAAATAAGCGCTCCAAAAATTATTATAGACGAGGATATCAGCCATTTTATCCATGAGCGTTTTCCAGCAAGCTACGAGTGGCATTTTATGGATATAACTTACGATTTAGGTATTCCGACAGTTTATGGTATCTGTTTCGGTGAAGCCGAATATGGTAAATTTGTAGCCGTAGGCACTGCGACAAGAGACACCTATGGCGAAGCATTGAAGAAAGTTATTCTCGAAATGGGGCAAAGCGTCAGCTATTTCAGATATTTGTTAGGAGAGAAAAAGAATTGGCAGCCTTCTGAAAACTTTCATACATTACTGGATTTCGAAGACCATTCTATACTATATATAAAAAAACCAGAACTGTGCGAGGTCTTCAAAATCTGGACGGAAACAAAGCCGACCAGAAAGATTGATTTTCTTGAAGAGTCTGTACGCTCAACCAAAGAGAACATCCGGCACATTACCAGCGTACTGAAGTCCAAAGGTTACAATGTATTAGTAAAAGACATCACGACTCCTGATGTAAATCAGGCAGGCTTCTATTGTCTGAGGGTTATCGTTCCTCAATTAATACAAATGGGTGGTGCGTATTCCTTTTATTTCCTGGGCGGAAAAAGACTATATACGATACCGCAGGAACTAGGCTACAAATGCTATCCTTTTGAAGAATTAAATGTATATCCACATCCATTCCCT", "points": [{"x":37.478184991274,"y":1},{"x":37.878184991274,"y":2},{"x":65.7286212914485,"y":2},{"x":65.7286212914485,"y":0},{"x":37.878184991274,"y":0}]} ,{ "name": "orf00016", "orfname": "orf00016", "gene_start": 3026, "gene_end": 3985, "gene_strand": "-", "real_start": 599, "real_end": 1558 , "real_strand": "+", "name": "orf00016", "color": "#8fbcb9", "yline": 10, "angle": -60, "xtext": 76.4725130890052, "motifs": "", "function": "Bacteriocin biosynthesis cyclodehydratase, SagC family ", "annotation":"Species=Clostridium botulinum (strain Kyoto / Type A2) | II | C
match=20.803%|Evalue=5.38e-04
UniRef:C1FSG2_CLOBJ", "protein":"MKQFDIFFDNDNKLYQVRTKTDTTTIEFTDSEKELIFKDLIRLYDTRDKISFSTIQKLLNKADYNKLLDVVKELQECGILDELNFEAEGATVISDIYNEVNHKPVSEMKIAYIGNTDFGNQVKEKSSEYNIEHFVIYSIDELSDETIESILCNSDFIIVDSLTWNPYKMHIINEKALKHSKPWLLIEGLTFSGKFSIGPIFHGKYTGCYDCYKNRIRSNDEFINFNDSYVKYLETEKASAKPDLNIQPVVKDMASAIVIADMLKFLYAWYPPETWKCCILINPSNYEVEKHTFIKAPICHVCKPALDYNPAPWLESVTL", "dna":"ATGAAACAATTTGATATATTCTTCGATAATGACAATAAACTGTATCAAGTAAGAACCAAAACAGATACAACAACCATAGAATTTACAGATTCCGAAAAAGAACTGATTTTTAAAGACTTGATCAGATTGTACGATACACGGGATAAAATATCTTTTTCAACAATCCAAAAACTATTAAATAAGGCTGACTATAACAAACTTTTGGATGTAGTAAAAGAGTTACAAGAATGTGGAATTCTAGATGAACTGAATTTCGAAGCAGAAGGTGCCACTGTTATTTCTGATATATATAATGAAGTCAATCACAAACCGGTTTCAGAAATGAAGATTGCTTATATTGGCAATACAGATTTTGGCAACCAAGTGAAAGAGAAATCATCCGAATATAACATAGAACATTTTGTTATCTACTCAATAGATGAATTGTCGGATGAAACAATTGAGTCAATCCTCTGTAACAGCGATTTTATCATTGTTGATTCTTTGACTTGGAATCCGTACAAAATGCACATTATCAACGAGAAGGCATTGAAACACAGCAAACCATGGTTATTGATTGAAGGACTGACTTTCTCTGGAAAATTCAGTATTGGGCCGATTTTCCACGGCAAATACACAGGATGTTATGATTGTTACAAAAATAGAATAAGGAGCAATGACGAATTCATCAACTTCAATGACTCTTACGTTAAATACCTTGAAACAGAGAAAGCATCAGCAAAACCAGACTTGAATATCCAACCGGTAGTAAAGGATATGGCTTCCGCTATTGTAATTGCAGATATGCTGAAGTTTCTTTATGCCTGGTATCCCCCGGAAACTTGGAAGTGTTGTATATTGATAAATCCGTCCAATTATGAAGTAGAAAAGCATACTTTTATAAAAGCTCCGATTTGTCATGTATGTAAACCAGCATTGGATTATAATCCGGCTCCGTGGCTCGAATCAGTAACTCTT", "points": [{"x":66.0122164048866,"y":1},{"x":66.4122164048866,"y":2},{"x":86.9328097731239,"y":2},{"x":86.9328097731239,"y":0},{"x":66.4122164048866,"y":0}]} ,{ "name": "sORF_3", "orfname": "sORF_3", "gene_start": 3985, "gene_end": 4086, "gene_strand": "+", "real_start": 498, "real_end": 599 , "real_strand": "-", "name": "sORF_3", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 88.0344677137871, "motifs": "RBS=ATATATCAAATTGTTTCA
", "function": "", "annotation":"", "protein":"LFFNLMGKIETSYLPLLPFVMNRKIVWLQKQTCx", "dna":"TTGTTTTTTAATTTAATGGGTAAAATCGAAACCAGCTATCTTCCGCTTCTTCCTTTCGTGATGAATCGAAAGATAGTCTGGCTTCAAAAACAGACTTGTTGA", "points": [{"x":86.9328097731239,"y":0},{"x":86.9328097731239,"y":2},{"x":88.7361256544503,"y":2},{"x":89.1361256544503,"y":1},{"x":88.7361256544503,"y":0}]} ,{ "name": "orf00018", "orfname": "orf00018", "gene_start": 4068, "gene_end": 4193, "gene_strand": "-", "real_start": 391, "real_end": 516 , "real_strand": "+", "name": "orf00018", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 90.1068935427574, "motifs": "", "function": "", "annotation":"", "protein":"VKSHTYTTIISLWYDYSHLSVTQNEILAVIQTTIKNQQVCF", "dna":"GTGAAATCACACACATATACTACGATTATTAGTTTATGGTACGATTATTCACATTTATCTGTTACGCAGAATGAGATTTTAGCAGTTATTCAAACAACTATCAAAAATCAACAAGTCTGTTTT", "points": [{"x":88.7434554973822,"y":1},{"x":89.1434554973822,"y":2},{"x":91.4703315881326,"y":2},{"x":91.4703315881326,"y":0},{"x":89.1434554973822,"y":0}]} ,{ "name": "orf00019", "orfname": "orf00019", "gene_start": 4261, "gene_end": 4404, "gene_strand": "-", "real_start": 180, "real_end": 323 , "real_strand": "+", "name": "orf00019", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 94.5135253054101, "motifs": "", "function": "", "annotation":"", "protein":"MKTKKLLSHTNYAAKVVASGCCCNCNSCCCCWSLFSSSASMEQAAVA", "dna":"ATGAAAACGAAAAAACTACTAAGCCACACAAATTATGCAGCTAAAGTTGTTGCTTCAGGTTGTTGCTGTAATTGCAATTCATGTTGCTGCTGCTGGTCACTTTTCTCCTCCAGTGCATCCATGGAACAGGCTGCTGTAGCC", "points": [{"x":92.9537521815009,"y":1},{"x":93.3537521815009,"y":2},{"x":96.0732984293194,"y":2},{"x":96.0732984293194,"y":0},{"x":93.3537521815009,"y":0}]} ]}