Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_bivia.result/NZ_JRNF010000351.92.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_bivia.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_bivia.result/NZ_JRNF010000351.92.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_bivia.result/NZ_JRNF010000351.92.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_bivia.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JRNF010000351.92.AOI_01 Sequence length = 16548 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 281 308 451 168 141 -6.57 0 - 0 - 99 - - +1 376 379 504 126 123 -2.83 0 0 - - 99 - 0 -3 548 467 330 216 135 -5.92 0 - - - 99 - 0 -3 782 782 618 162 162 -7.46 0 0 - - 99 - 0 +1 553 637 786 231 147 -0.59 0 0 - - 99 - 0 +2 1571 1646 1810 237 162 -12.46 0 - 0 - - 99 - -1 1854 1842 1702 150 138 -7.80 0 - - - 0 99 - -1 2109 2094 1912 195 180 -12.83 0 - 0 - 0 99 - +2 1811 1877 2245 432 366 -1.81 0 - 0 - - 99 - +3 2166 2172 2297 129 123 -8.83 0 - - 0 - 99 - 0001 -2 2923 2866 1277 1644 1587 15.13 99 - - - - 99 - +1 3034 3043 3168 132 123 2.82 0 0 - - - - 99 +1 3169 3169 3357 186 186 -1.48 0 0 - - - - 99 -2 3424 3379 3254 168 123 -9.98 0 - - - - 0 99 -2 3619 3547 3425 192 120 -9.06 0 - - - - 0 99 -1 3819 3732 3565 252 165 -13.17 0 - - - 0 - 99 +1 3784 3928 4068 282 138 3.99 0 0 - - - - 99 0002 -3 4313 4292 2904 1407 1386 11.54 99 - - - - - 99 0003 +2 4202 4229 4408 204 177 -7.31 99 - 99 - - - - +2 4961 5042 5203 240 159 -2.05 0 - 0 - 99 - - +3 5058 5061 5228 168 165 -5.14 0 - - 0 99 - - +2 5411 5423 5557 144 132 1.53 0 - 0 - 99 - - 0004 -1 5826 5808 4558 1266 1248 11.25 99 - - - 99 - - +2 5864 6056 6244 378 186 -0.58 0 - 0 - - 99 - +3 6333 6342 6470 135 126 1.21 0 - 0 0 - 99 - +3 6531 6549 6743 210 192 -1.07 0 - - 0 - 99 - -3 6806 6782 6633 171 147 -2.28 0 - - - - 99 0 +3 6774 6774 6917 141 141 -2.06 0 - - 0 - 99 - 0005 -2 7066 7063 5822 1242 1239 11.70 99 - - - - 99 - 0006 +3 6918 6966 7115 195 147 2.15 99 - - 99 - - - 0007 -1 7200 7197 7063 135 132 -7.86 99 - - - 99 - - +3 7281 7410 7610 327 198 0.48 0 - - 0 - 99 - +3 7671 7944 8090 417 144 -3.56 0 - - 0 - 99 - +1 8065 8134 8283 216 147 -7.05 0 0 - - - 99 - +3 8193 8211 8372 177 159 -3.40 0 - 0 0 - 99 - +2 8396 8429 8575 177 144 -7.38 0 - 0 - - 99 - 0008 -2 8707 8680 7067 1638 1611 11.92 99 - - - - 99 - 0009 +3 9039 9045 9269 228 222 1.04 99 - - 99 - - - 0010 +1 9121 9157 9945 822 786 10.10 99 99 - - - - - -3 9959 9821 9621 336 198 -1.79 0 99 - - - - 0 +2 9827 9884 10021 192 135 0.66 0 - 0 - 99 - - -1 10281 10263 10102 177 159 -3.97 0 - - 99 0 - - -3 10490 10484 10335 153 147 -1.51 0 - - 99 - 0 0 -2 10576 10396 10274 300 120 -6.83 0 - - 99 - 0 - -3 10937 10721 10560 375 159 -11.30 0 - - 99 - - 0 -1 10971 10962 10834 135 126 -1.34 0 - - 99 0 - - 0011 +3 9993 9999 11150 1155 1149 10.65 99 - - 99 - - - 0012 +1 11092 11104 11304 210 198 1.14 99 99 - - - - - 0013 -2 11305 11302 11132 171 168 3.03 78 21 - - - 78 - -3 11723 11723 11565 156 156 -4.45 0 99 - - 0 - 0 -1 12009 11745 11560 447 183 -1.26 0 99 - - 0 - - -3 12302 12233 12090 210 141 0.95 0 99 - - - - 0 +2 12374 12380 12514 138 132 -4.79 0 99 0 - - 0 - -1 12573 12561 12427 144 132 -10.42 0 99 - - 0 - - +2 12578 12581 12715 135 132 -4.26 0 99 0 - - - - +2 12845 12914 13039 192 123 -5.90 0 99 0 - - - 0 -3 13418 13412 13260 156 150 -1.49 0 99 - - - - 0 -3 14024 13943 13794 228 147 -6.45 0 99 - - - - 0 -1 14766 14418 14296 468 120 -10.08 0 99 0 - 0 - - 0014 +1 11332 11344 14799 3465 3453 14.72 99 99 - - - - - 0015 +2 14615 14693 14827 210 132 -9.96 99 - 99 - - - - 0016 +3 14730 14736 14888 156 150 -0.24 99 - - 99 - - - +2 14957 15092 15217 258 123 -4.39 0 99 0 - 0 - - -1 15351 15045 14878 471 165 -3.88 0 99 - - 0 - - -1 15969 15927 15757 210 168 -2.44 0 99 - - 0 - - 0017 +1 14806 14824 16422 1614 1596 15.89 99 99 - - - - - 0018 +2 16193 16286 16444 249 156 -4.26 99 - 99 - - - - 0019 -3 16547 16547 16359 186 186 1.98 99 - - - - - 99