Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_JRNU010000101.216.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_JRNU010000101.216.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_JRNU010000101.216.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JRNU010000101.216.AOI_01 Sequence length = 11211 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 359 392 538 177 144 -8.13 0 - 0 - - 99 - +3 516 555 716 198 159 4.63 0 - - 0 - 99 - +3 732 798 938 204 138 2.89 0 - - 0 - 99 - 0001 -2 1276 1213 62 1212 1149 15.64 99 - - - - 99 - +1 1252 1327 1455 201 126 9.12 0 0 - - - - 99 +3 1431 1452 1574 141 120 -5.05 0 0 - 0 - - 99 +1 1456 1468 1590 132 120 2.80 0 0 - - - - 99 0002 -3 2075 2054 1263 810 789 15.76 99 - - - - - 99 0003 +2 2387 2396 2527 138 129 3.92 87 - 87 - - - 12 0004 -3 2630 2552 2361 267 189 5.45 99 - - - - - 99 -3 2936 2864 2685 249 177 -9.63 0 - - 99 - - 0 -2 3016 3001 2861 153 138 -3.43 0 - - 99 - 0 - +2 3311 3317 3493 180 174 -12.59 0 - 0 99 - 0 - -2 3538 3295 3119 417 174 6.41 0 - - 99 - 0 - -2 4090 3724 3599 489 123 7.81 0 - - 99 - 0 - 0005 +3 2511 2529 4145 1632 1614 12.33 99 - - 99 - - - -1 4464 4443 4120 342 321 8.43 0 - 99 - 0 - - -1 4659 4659 4465 192 192 5.79 0 - 99 - 0 - - -1 4875 4827 4678 195 147 9.47 0 - 99 - 0 - - -2 5047 5014 4871 174 141 -9.16 0 - 99 - - 0 - -1 5061 5061 4876 183 183 -2.15 0 - 99 - 0 - - 0006 +2 4124 4145 5386 1260 1239 14.74 99 - 99 - - - - -2 5797 5761 5543 252 216 3.02 0 - - 99 - 0 - -3 6041 5957 5775 264 180 2.35 0 - - 99 - - 0 -2 6316 6301 5996 318 303 1.83 0 - - 99 - 0 - -3 6569 6557 6390 177 165 -2.56 0 - - 99 - - 0 0007 +3 5382 5394 6650 1266 1254 12.99 99 - - 99 - - - 0008 -3 7391 7343 6807 582 534 14.68 99 - - - - - 99 +2 7355 7493 7687 330 192 -10.90 0 - 0 - - 99 - +2 7688 7703 7849 159 144 -5.18 0 - 0 - - 99 - -1 7908 7869 7726 180 141 -5.59 0 - - - 0 99 - +3 7935 7968 8150 213 180 3.57 0 - - 0 - 99 - +3 8598 8610 8741 141 129 1.36 0 - - 0 - 99 - -1 9102 9084 8950 150 132 -12.11 0 - - - 0 99 - 0009 -2 9229 9211 7433 1794 1776 15.26 99 - - - - 99 - -3 9791 9788 9666 123 120 -0.75 0 0 99 - 0 - 0 +1 9637 9694 9831 192 135 -0.17 0 0 96 - 3 - - -1 9930 9870 9433 495 435 1.78 0 - 99 - 0 - - 0010 +2 9350 9359 10177 825 816 8.85 99 - 99 - - - - 0011 -2 10207 10180 10034 171 144 -0.38 99 - - - - 99 - 0012 +1 10174 10192 10644 468 450 10.84 99 99 - - - - - 0013 -1 11040 11028 10795 243 231 7.46 99 - - - 99 - -