Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000851.34.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000851.34.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000851.34.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ADFQ010000851.34.AOI_01 Sequence length = 21137 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 207 219 497 288 276 8.00 99 - - 99 - - - +1 889 1006 1128 237 120 0.54 0 0 - - 99 - - +2 1118 1136 1321 201 183 3.89 0 - 0 - 99 - - 0002 -1 2046 2034 430 1614 1602 13.84 99 - - - 99 - - 0003 -2 2173 2167 2027 144 138 12.35 99 - - - - 99 - -1 2430 2430 2302 126 126 10.52 1 - 98 - 1 - - -2 2998 2989 2837 159 150 0.27 0 - 99 - - 0 - +1 3358 3394 3519 159 123 -5.02 0 0 99 - - - - 0004 +2 2306 2327 3598 1290 1269 11.77 99 - 99 - - - - -3 4118 4100 3975 141 123 4.84 0 99 - - - - 0 -3 4388 4370 4185 201 183 4.09 0 99 - - - - 0 -3 4916 4817 4686 228 129 4.80 0 99 - - - - 0 0005 +1 3610 3637 4977 1365 1338 11.38 99 99 - - - - - 0006 +3 5130 5172 5390 258 216 -4.10 99 - - 99 - - - +1 5602 5620 5754 150 132 5.39 0 0 - 0 - 0 99 +3 5532 5649 5828 294 177 2.71 0 - - 0 - 0 99 -2 5956 5743 5618 336 123 4.28 0 0 - 0 - 0 99 0007 -3 6059 6056 5220 837 834 13.64 99 - - - - - 99 +2 6287 6287 6418 129 129 8.08 0 - 0 - 99 - - 0008 -1 6582 6576 6130 450 444 16.37 99 - - - 99 - - 0009 -2 6871 6868 6704 165 162 13.24 99 - - - - 99 - -3 7139 7136 7014 123 120 -3.62 0 - 17 - 82 - 0 0010 +3 7050 7053 7178 126 123 2.01 27 - 67 27 4 - - -1 7446 7377 6913 531 462 5.86 0 - 99 - 0 - - +3 7566 7566 7754 186 186 3.69 0 - 99 0 - - - -3 7925 7913 7788 135 123 -6.25 0 - 99 - 0 - 0 -1 7941 7824 7669 270 153 7.44 0 - 99 - 0 - - -2 7984 7957 7829 153 126 -4.62 0 - 99 - - 0 - -1 8373 8310 8059 312 249 1.48 0 - 99 - 0 - - -1 8718 8706 8563 153 141 0.21 0 - 99 - 0 - - -1 9054 9024 8896 156 126 -1.36 0 - 99 - 0 - - -1 9462 9288 9109 351 177 7.48 0 - 99 - 0 - - 0011 +2 6776 6788 9763 2985 2973 9.56 99 - 99 - - - - +1 10285 10324 10464 177 138 -6.05 0 0 - - 99 - - +2 10442 10481 10642 198 159 4.05 0 - 0 - 99 - - +2 10658 10724 10864 204 138 1.77 0 - 0 - 99 - - 0012 -1 11202 11139 9988 1212 1149 16.43 99 - - - 99 - - +3 11178 11253 11381 201 126 8.94 0 - - 0 - 99 - +2 11357 11378 11500 141 120 -2.78 0 - 0 0 - 99 - +3 11382 11394 11516 132 120 3.68 0 - - 0 - 99 - 0013 -2 12001 11980 11189 810 789 16.13 99 - - - - 99 - 0014 -2 12448 12439 12287 159 150 6.96 99 - - - - 99 - -1 12861 12789 12610 249 177 -7.45 0 99 - - 0 - - -3 12941 12926 12786 153 138 -1.07 0 99 - - - - 0 +3 13236 13242 13418 180 174 -11.24 0 99 - 0 - - 0 -3 13463 13220 13044 417 174 5.86 0 99 - - - - 0 -3 14015 13649 13524 489 123 6.22 0 99 - - - - 0 0015 +1 12436 12454 14070 1632 1614 12.17 99 99 - - - - - -2 14389 14368 14045 342 321 8.25 0 - - 99 - 0 - -2 14584 14584 14390 192 192 5.64 0 - - 99 - 0 - -2 14800 14779 14603 195 174 8.55 0 - - 99 - 0 - -3 14972 14939 14796 174 141 -6.21 0 - - 99 - - 0 -2 14986 14986 14801 183 183 -1.26 0 - - 99 - 0 - 0016 +3 14049 14070 15311 1260 1239 15.26 99 - - 99 - - - -3 15722 15686 15468 252 216 3.54 0 99 - - - - 0 -1 15966 15882 15700 264 180 3.66 0 99 - - 0 - - -3 16241 16226 15921 318 303 1.53 0 99 - - - - 0 -1 16494 16482 16315 177 165 -1.40 0 99 - - 0 - - 0017 +1 15307 15319 16575 1266 1254 13.58 99 99 - - - - - 0018 -1 17316 17268 16732 582 534 14.24 99 - - - 99 - - +3 17280 17418 17612 330 192 -5.97 0 - - 0 - - 99 +3 17613 17628 17774 159 144 -3.19 0 - - 0 - - 99 -2 17833 17794 17651 180 141 -3.69 0 - - - - 0 99 +1 17860 17893 18075 213 180 4.50 0 0 - - - - 99 +1 18523 18535 18666 141 129 2.89 0 0 - - - - 99 0019 -3 19154 19136 17358 1794 1776 15.96 99 - - - - - 99 -1 19716 19713 19591 123 120 -0.01 0 - 0 98 0 1 - +2 19562 19619 19756 192 135 1.46 0 - 0 77 - 22 - -2 19855 19843 19358 495 483 2.88 0 - - 99 - 0 - 0020 +3 19275 19284 20102 825 816 9.64 99 - - 99 - - - 0021 -3 20132 20105 19959 171 144 1.11 99 - - - - - 99 0022 +2 20099 20117 20569 468 450 13.15 99 - 99 - - - - 0023 -3 20966 20954 20703 261 249 8.86 99 - - - - - 99