Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000751.43.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000751.43.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/NZ_ADFQ010000751.43.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_amnii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ADFQ010000751.43.AOI_01 Sequence length = 20553 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 65 92 319 252 225 0.55 0 - 0 - - 99 - +2 902 905 1039 135 132 -0.82 0 - 0 - - 99 - 0001 -2 1156 1117 590 564 525 7.05 99 - - - - 99 - 0002 +1 1177 1177 1413 234 234 7.08 99 99 - - - - - -2 1726 1648 1511 213 135 -2.71 0 0 - - 99 0 - +3 1662 1707 1952 288 243 -9.74 0 1 - 0 98 - - +1 1456 1729 1977 519 246 -4.26 2 2 - - 97 - - -3 2093 1997 1851 240 144 -10.62 0 - - - 67 32 0 0003 +2 1865 1949 2110 243 159 -5.41 49 - 49 - 23 26 - +3 2019 2025 2150 129 123 -10.14 0 1 - 0 12 85 - +1 2029 2032 2154 123 120 -7.19 4 4 - - 81 14 - -2 2158 2011 1775 381 234 -6.08 0 - - - 99 0 - +2 2111 2183 2335 222 150 -9.47 1 3 1 - 95 - - 0004 -1 2568 1665 1477 1089 186 4.57 99 0 - - 99 - - 0005 -3 2726 2708 2580 144 126 0.03 71 0 - 28 - - 71 0006 +1 2362 2497 2730 366 231 -1.15 99 99 - - - - - 0007 +3 2535 2577 2774 237 195 -2.33 99 - - 99 - - - +1 2962 2968 3120 156 150 -5.87 0 0 - - 99 - - -2 3229 3223 3044 183 177 -3.07 0 - - 0 99 0 - +1 3121 3130 3255 132 123 -2.74 0 0 - 0 99 - - +3 3012 3156 3287 273 129 -6.69 0 - - 0 99 - - +1 3568 3568 3786 216 216 -2.26 0 0 - - 99 - - +1 3829 3880 4002 171 120 -2.73 0 0 0 - 99 - - +2 3881 3905 4114 231 207 -4.33 0 - 0 - 99 - - +2 4115 4124 4294 177 168 -2.34 0 - 0 - 99 0 - -2 4309 4189 4022 285 165 -9.52 0 - - - 99 0 - +3 4266 4275 4442 174 165 -10.37 0 - - 0 99 - - 0008 +2 4295 4307 4465 168 156 -0.14 90 - 90 - 9 - - 0009 -1 4470 4053 2719 1749 1332 0.46 99 - - - 99 - - 0010 -2 4492 4486 4334 156 150 -0.38 99 - - - - 99 - +1 4492 4513 4683 189 168 4.12 0 0 - - - - 99 +3 4605 4680 4847 240 165 7.28 0 - - 0 - - 99 +1 5485 5491 5670 183 177 3.40 0 0 - - - - 99 0011 -3 5747 5744 4467 1278 1275 12.12 99 - - - - - 99 +2 5888 5906 6037 147 129 -2.58 1 - 1 - - 98 - 0012 -2 6076 6076 5897 177 177 3.42 99 - - - - 99 - 0013 -2 6391 6265 6101 288 162 11.35 99 - - - - 99 - -1 6450 6441 6310 138 129 5.31 0 99 - - 0 - - 0014 +1 6262 6283 6708 444 423 11.26 99 99 - - - - - 0015 -3 6764 6752 6594 168 156 9.18 99 - - - - 0 99 0016 -2 6784 6781 6566 216 213 5.60 99 - - - - 99 - 0017 -1 6831 6819 6688 141 129 4.98 99 - - - 99 - - 0018 +2 7010 7022 7165 153 141 -0.03 99 - 99 - - - - 0019 +3 7212 7233 7358 144 123 7.44 99 - - 99 - - - 0020 -2 7522 7510 7340 180 168 6.14 99 - - - - 99 - -3 8063 8057 7848 213 207 5.58 0 99 - - - - 0 -1 8385 8340 8155 228 183 4.22 0 99 - - 0 - - 0021 +1 7435 7441 8400 963 957 13.53 99 99 - - - - - +2 8711 8738 8908 195 168 1.97 0 99 0 - - - - -2 8980 8971 8837 141 132 -2.00 0 99 - - - 0 - -3 9089 9008 8874 213 132 3.88 2 97 - - - - 2 -1 9123 9102 8971 150 129 3.19 1 98 - - 1 - - -1 9276 9252 9124 150 126 1.60 0 99 - - 0 - - -3 9494 9461 9315 177 144 2.95 0 99 - - - - 0 +3 9531 9552 9674 141 120 -1.68 0 99 - 0 - - - 0022 +1 8401 8413 9708 1305 1293 9.24 99 99 - - - - - -2 9727 9700 9563 162 135 -0.03 0 99 - - - 0 - -1 9945 9873 9679 264 192 7.59 0 - 99 - 0 - - -2 9982 9886 9761 219 123 8.99 1 - 98 - 0 1 - 0023 +3 9942 9969 10184 240 213 0.55 48 - 51 48 - - - 0024 +2 9683 9683 10597 912 912 5.60 99 - 99 - - - - 0025 -2 10612 10573 10433 177 138 4.92 84 - 15 - - 84 - -2 10873 10864 10613 258 249 2.87 0 - - 99 - 0 - 0026 -1 11064 11013 10861 201 150 4.95 44 - - 55 44 - - 0027 -2 11155 11086 10949 204 135 2.79 81 - - 18 - 81 - -3 11354 11234 11010 342 222 1.36 0 - - 99 - - 0 -2 11365 11350 11228 135 120 7.13 2 - - 73 - 2 24 0028 +3 10551 10551 11447 894 894 7.61 99 - - 99 - - - 0029 -1 11523 11520 11392 129 126 10.38 99 - - - 99 - - 0030 -3 11570 11558 11427 141 129 4.98 99 - - - - - 99 -2 11818 11773 11624 192 147 8.88 5 - 3 90 - 5 0 -2 12097 12097 11906 189 189 7.00 0 - - 99 - 0 - 0031 +3 11571 11595 12317 744 720 11.35 99 - - 99 - - - -3 12317 12314 12117 198 195 5.72 0 - - 99 - - 0 0032 -2 12487 12466 12293 192 171 4.03 99 - - - - 99 - +1 12478 12517 12696 216 177 2.39 0 0 99 - - - - 0033 +2 12311 12314 12847 534 531 11.56 99 - 99 - - - - -1 13113 13026 12862 249 162 7.47 1 - 98 - 1 - - -2 13309 13303 13097 210 204 7.41 0 - 99 - - 0 - -1 13422 13416 13294 126 120 3.88 2 - 97 - 2 - - +1 13498 13525 13650 150 123 4.01 0 0 99 - - - - 0034 +2 12866 12893 13675 807 780 12.89 99 - 99 - - - - 0035 -2 13684 13684 13553 129 129 7.43 99 - - - - 99 - 0036 -3 13874 13871 13713 159 156 6.78 99 - - - - - 99 -1 13983 13950 13795 186 153 6.43 0 99 - - 0 - - -3 14375 14348 14148 225 198 2.29 0 99 - - - - 0 -2 14515 14482 14345 168 135 -5.30 0 99 - - - 0 - +2 14444 14483 14632 186 147 8.60 0 99 0 - - - - -3 14879 14867 14718 159 147 7.49 0 99 - - - - 0 +2 14813 14816 15007 192 189 5.88 0 99 0 - - - - -2 15091 15049 14915 174 132 6.28 0 99 - - - 0 - +2 15221 15236 15364 141 126 -0.07 0 99 0 - - - - -3 15476 15476 15345 129 129 7.21 0 99 - - - - 0 -2 15781 15757 15554 225 201 1.35 0 99 - - - 0 - 0037 +1 13723 13741 15906 2181 2163 12.66 99 99 - - - - - 0038 -1 15912 15912 15763 147 147 5.04 99 - - - 99 - - 0039 -2 16009 16006 15839 168 165 6.52 99 - - - - 99 - 0040 -1 16056 16044 15913 141 129 4.98 99 - - - 99 - - +1 16177 16198 16326 147 126 -3.87 0 0 - 53 - 0 45 0041 -2 16384 16189 16064 318 123 4.81 99 - - - - 99 - -2 16573 16570 16421 150 147 -2.98 3 - - 4 - 3 92 0042 +1 16627 16630 16767 138 135 -3.59 68 68 - 29 - - 2 +1 16768 16780 16905 135 123 -1.87 0 0 - 0 - - 99 0043 +3 16134 17130 17279 1143 147 -3.54 29 - - 29 - - 70 -1 17292 17289 17140 150 147 -6.94 0 - - - 0 - 99 0044 -2 17368 17347 17186 180 159 -6.86 61 0 0 - - 61 38 0045 -3 17399 17189 16074 1323 1113 0.78 99 - - - - - 99 +1 17167 17281 17403 234 120 -2.02 0 0 99 - - - 0 0046 +2 17162 17168 17407 243 237 -3.51 99 - 99 - - - - -3 17675 17639 17505 168 132 5.01 2 97 - - - - 2 -1 18201 18120 17911 288 207 2.65 0 99 - - 0 - - -3 18251 18245 18120 129 123 0.13 0 99 - - - - 0 -1 18585 18402 18202 381 198 3.43 0 99 - - 0 - - 0047 +1 17509 17545 18831 1320 1284 7.32 99 99 - - - - - 0048 +3 18822 18831 19010 186 177 1.44 99 - - 99 - - - -2 19357 19354 19208 147 144 3.94 0 - - 99 - 0 - -3 19433 19415 19257 174 156 3.64 0 - - 99 - - 0 0049 +3 19074 19143 19442 366 297 11.27 99 - - 99 - - - 0050 +1 19480 19495 19671 189 174 6.17 99 99 - - - - - 0051 -3 19937 19787 19665 270 120 8.17 93 - - 6 - - 93 +2 19823 19904 20032 207 126 -1.09 0 - 0 - 99 - - 0052 -1 20034 20010 19720 312 288 2.41 99 - - - 99 - - 0053 -2 20281 20095 19925 354 168 2.83 99 - - - - 99 - 0054 +3 20013 20154 20300 285 144 -6.65 14 0 - 14 - - 84 +1 20155 20245 20421 264 174 2.69 0 0 - - - - 99 0055 -3 20438 20435 20022 414 411 2.06 99 - - - - - 99 0056 +3 20301 20340 20468 165 126 1.98 99 - - 99 - - -