/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF13575.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF13575.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.lanl.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/lanl.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF04738.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF04738.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247291.323.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247291.323.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247341.326.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247341.326.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000011.331.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000011.331.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000021.337.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000021.337.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.lanl.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/lanl.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF04738.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF04738.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF13575.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF13575.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
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/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.PF02624.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt
/data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch --noali --cpu 8 --domtblout /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.PF14028.domtblout --domT 25 /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.tmp_proteins.fna >>/data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/logfile.txt