/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.fna -queryname NC_0178611.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.fna -queryname NC_0178611.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.fna -queryname NC_0178611.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.AOI.fna -queryname NC_0178611.0
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178611.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NC_0178611.0
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NC_0178611.0.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.fna -queryname NZ_JAEZ010000011.9
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.fna -queryname NZ_JAEZ010000011.9
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000011.9.fna -queryname NZ_JAEZ010000011.9
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000231.99.fna -queryname NZ_LBGT010000231.99
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000231.99.fna -queryname NZ_LBGT010000231.99
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000231.99.fna -queryname NZ_LBGT010000231.99
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000091.100.fna -queryname NZ_LBGT010000091.100
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000091.100.fna -queryname NZ_LBGT010000091.100
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000091.100.fna -queryname NZ_LBGT010000091.100
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000441.101.fna -queryname NZ_LBGT010000441.101
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000441.101.fna -queryname NZ_LBGT010000441.101
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000441.101.fna -queryname NZ_LBGT010000441.101
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000061.102.fna -queryname NZ_LBGT010000061.102
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000061.102.fna -queryname NZ_LBGT010000061.102
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000061.102.fna -queryname NZ_LBGT010000061.102
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000411.103.fna -queryname NZ_LBGT010000411.103
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000411.103.fna -queryname NZ_LBGT010000411.103
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000411.103.fna -queryname NZ_LBGT010000411.103
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000011.104.fna -queryname NZ_LBGT010000011.104
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000011.104.fna -queryname NZ_LBGT010000011.104
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000011.104.fna -queryname NZ_LBGT010000011.104
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832591.105.fna -queryname NZ_KQ9832591.105
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832591.105.fna -queryname NZ_KQ9832591.105
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832591.105.fna -queryname NZ_KQ9832591.105
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832621.106.fna -queryname NZ_KQ9832621.106
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832621.106.fna -queryname NZ_KQ9832621.106
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832621.106.fna -queryname NZ_KQ9832621.106
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832631.107.fna -queryname NZ_KQ9832631.107
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832631.107.fna -queryname NZ_KQ9832631.107
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832631.107.fna -queryname NZ_KQ9832631.107
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000131.108.fna -queryname NZ_LBGT010000131.108
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000131.108.fna -queryname NZ_LBGT010000131.108
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000131.108.fna -queryname NZ_LBGT010000131.108
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000131.10.fna -queryname NZ_JAEZ010000131.10
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000131.10.fna -queryname NZ_JAEZ010000131.10
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000131.10.fna -queryname NZ_JAEZ010000131.10
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000211.109.fna -queryname NZ_LBGT010000211.109
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000211.109.fna -queryname NZ_LBGT010000211.109
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000211.109.fna -queryname NZ_LBGT010000211.109
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000701.110.fna -queryname NZ_LBGT010000701.110
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000701.110.fna -queryname NZ_LBGT010000701.110
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000701.110.fna -queryname NZ_LBGT010000701.110
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000051.111.fna -queryname NZ_LBGT010000051.111
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000051.111.fna -queryname NZ_LBGT010000051.111
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000051.111.fna -queryname NZ_LBGT010000051.111
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000361.112.fna -queryname NZ_LBGT010000361.112
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000361.112.fna -queryname NZ_LBGT010000361.112
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000361.112.fna -queryname NZ_LBGT010000361.112
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000261.113.fna -queryname NZ_LBGT010000261.113
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000261.113.fna -queryname NZ_LBGT010000261.113
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000261.113.fna -queryname NZ_LBGT010000261.113
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832611.114.fna -queryname NZ_KQ9832611.114
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832611.114.fna -queryname NZ_KQ9832611.114
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832611.114.fna -queryname NZ_KQ9832611.114
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.fna -queryname NZ_LBGT010000341.115
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.fna -queryname NZ_LBGT010000341.115
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000341.115.fna -queryname NZ_LBGT010000341.115
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000041.116.fna -queryname NZ_LBGT010000041.116
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000041.116.fna -queryname NZ_LBGT010000041.116
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000041.116.fna -queryname NZ_LBGT010000041.116
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000641.117.fna -queryname NZ_LBGT010000641.117
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000641.117.fna -queryname NZ_LBGT010000641.117
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000641.117.fna -queryname NZ_LBGT010000641.117
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000101.118.fna -queryname NZ_LBGT010000101.118
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000101.118.fna -queryname NZ_LBGT010000101.118
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000101.118.fna -queryname NZ_LBGT010000101.118
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000021.11.fna -queryname NZ_JAEZ010000021.11
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000021.11.fna -queryname NZ_JAEZ010000021.11
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000021.11.fna -queryname NZ_JAEZ010000021.11
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.fna -queryname NZ_NHRV010000011.119
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.fna -queryname NZ_NHRV010000011.119
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.fna -queryname NZ_NHRV010000011.119
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.AOI.fna -queryname NZ_NHRV010000011.119
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000011.119.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_NHRV010000011.119
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_NHRV010000011.119.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.fna -queryname NZ_NHRV010000021.120
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.fna -queryname NZ_NHRV010000021.120
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NHRV010000021.120.fna -queryname NZ_NHRV010000021.120
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145981.121.fna -queryname NZ_AP0145981.121
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145981.121.fna -queryname NZ_AP0145981.121
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145981.121.fna -queryname NZ_AP0145981.121
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.fna -queryname NZ_AP0145971.122
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.fna -queryname NZ_AP0145971.122
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.fna -queryname NZ_AP0145971.122
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.AOI.fna -queryname NZ_AP0145971.122
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_AP0145971.122.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_AP0145971.122
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_AP0145971.122.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000561.123.fna -queryname NZ_NSLY010000561.123
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000561.123.fna -queryname NZ_NSLY010000561.123
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000561.123.fna -queryname NZ_NSLY010000561.123
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000311.124.fna -queryname NZ_NSLY010000311.124
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000311.124.fna -queryname NZ_NSLY010000311.124
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000311.124.fna -queryname NZ_NSLY010000311.124
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000021.125.fna -queryname NZ_NSLY010000021.125
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000021.125.fna -queryname NZ_NSLY010000021.125
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000021.125.fna -queryname NZ_NSLY010000021.125
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000471.126.fna -queryname NZ_NSLY010000471.126
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000471.126.fna -queryname NZ_NSLY010000471.126
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000471.126.fna -queryname NZ_NSLY010000471.126
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000221.127.fna -queryname NZ_NSLY010000221.127
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000221.127.fna -queryname NZ_NSLY010000221.127
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000221.127.fna -queryname NZ_NSLY010000221.127
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000301.128.fna -queryname NZ_NSLY010000301.128
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000301.128.fna -queryname NZ_NSLY010000301.128
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000301.128.fna -queryname NZ_NSLY010000301.128
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000081.12.fna -queryname NZ_JAEZ010000081.12
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000081.12.fna -queryname NZ_JAEZ010000081.12
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000081.12.fna -queryname NZ_JAEZ010000081.12
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000411.129.fna -queryname NZ_NSLY010000411.129
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000411.129.fna -queryname NZ_NSLY010000411.129
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000411.129.fna -queryname NZ_NSLY010000411.129
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000121.130.fna -queryname NZ_NSLY010000121.130
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000121.130.fna -queryname NZ_NSLY010000121.130
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000121.130.fna -queryname NZ_NSLY010000121.130
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000371.131.fna -queryname NZ_NSLY010000371.131
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000371.131.fna -queryname NZ_NSLY010000371.131
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000371.131.fna -queryname NZ_NSLY010000371.131
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000061.132.fna -queryname NZ_NSLY010000061.132
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000061.132.fna -queryname NZ_NSLY010000061.132
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000061.132.fna -queryname NZ_NSLY010000061.132
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000671.133.fna -queryname NZ_NSLY010000671.133
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000671.133.fna -queryname NZ_NSLY010000671.133
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000671.133.fna -queryname NZ_NSLY010000671.133
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000091.134.fna -queryname NZ_NSLY010000091.134
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000091.134.fna -queryname NZ_NSLY010000091.134
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000091.134.fna -queryname NZ_NSLY010000091.134
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000331.135.fna -queryname NZ_NSLY010000331.135
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000331.135.fna -queryname NZ_NSLY010000331.135
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000331.135.fna -queryname NZ_NSLY010000331.135
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000511.136.fna -queryname NZ_NSLY010000511.136
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000511.136.fna -queryname NZ_NSLY010000511.136
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000511.136.fna -queryname NZ_NSLY010000511.136
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000101.137.fna -queryname NZ_NSLY010000101.137
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000101.137.fna -queryname NZ_NSLY010000101.137
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000101.137.fna -queryname NZ_NSLY010000101.137
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000541.138.fna -queryname NZ_NSLY010000541.138
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000541.138.fna -queryname NZ_NSLY010000541.138
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000541.138.fna -queryname NZ_NSLY010000541.138
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000251.13.fna -queryname NZ_JAEZ010000251.13
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000251.13.fna -queryname NZ_JAEZ010000251.13
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000251.13.fna -queryname NZ_JAEZ010000251.13
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000011.139.fna -queryname NZ_NSLY010000011.139
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000011.139.fna -queryname NZ_NSLY010000011.139
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000011.139.fna -queryname NZ_NSLY010000011.139
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000071.140.fna -queryname NZ_NSLY010000071.140
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000071.140.fna -queryname NZ_NSLY010000071.140
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000071.140.fna -queryname NZ_NSLY010000071.140
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000051.141.fna -queryname NZ_NSLY010000051.141
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000051.141.fna -queryname NZ_NSLY010000051.141
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000051.141.fna -queryname NZ_NSLY010000051.141
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000401.142.fna -queryname NZ_NSLY010000401.142
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000401.142.fna -queryname NZ_NSLY010000401.142
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000401.142.fna -queryname NZ_NSLY010000401.142
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000341.143.fna -queryname NZ_NSLY010000341.143
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000341.143.fna -queryname NZ_NSLY010000341.143
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000341.143.fna -queryname NZ_NSLY010000341.143
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.fna -queryname NZ_NSLY010000031.144
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.fna -queryname NZ_NSLY010000031.144
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.fna -queryname NZ_NSLY010000031.144
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.AOI.fna -queryname NZ_NSLY010000031.144
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000031.144.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_NSLY010000031.144
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_NSLY010000031.144.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000351.145.fna -queryname NZ_NSLY010000351.145
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000351.145.fna -queryname NZ_NSLY010000351.145
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000351.145.fna -queryname NZ_NSLY010000351.145
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000631.146.fna -queryname NZ_NSLY010000631.146
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000631.146.fna -queryname NZ_NSLY010000631.146
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000631.146.fna -queryname NZ_NSLY010000631.146
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000611.147.fna -queryname NZ_NSLY010000611.147
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000611.147.fna -queryname NZ_NSLY010000611.147
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000611.147.fna -queryname NZ_NSLY010000611.147
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000191.148.fna -queryname NZ_NSLY010000191.148
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000191.148.fna -queryname NZ_NSLY010000191.148
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000191.148.fna -queryname NZ_NSLY010000191.148
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000151.14.fna -queryname NZ_JAEZ010000151.14
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000151.14.fna -queryname NZ_JAEZ010000151.14
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000151.14.fna -queryname NZ_JAEZ010000151.14
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000211.149.fna -queryname NZ_NSLY010000211.149
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000211.149.fna -queryname NZ_NSLY010000211.149
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000211.149.fna -queryname NZ_NSLY010000211.149
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000081.150.fna -queryname NZ_NSLY010000081.150
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000081.150.fna -queryname NZ_NSLY010000081.150
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000081.150.fna -queryname NZ_NSLY010000081.150
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000171.151.fna -queryname NZ_NSLY010000171.151
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000171.151.fna -queryname NZ_NSLY010000171.151
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000171.151.fna -queryname NZ_NSLY010000171.151
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000231.152.fna -queryname NZ_NSLY010000231.152
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000231.152.fna -queryname NZ_NSLY010000231.152
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000231.152.fna -queryname NZ_NSLY010000231.152
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000641.153.fna -queryname NZ_NSLY010000641.153
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000641.153.fna -queryname NZ_NSLY010000641.153
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000641.153.fna -queryname NZ_NSLY010000641.153
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000491.154.fna -queryname NZ_NSLY010000491.154
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000491.154.fna -queryname NZ_NSLY010000491.154
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000491.154.fna -queryname NZ_NSLY010000491.154
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000321.155.fna -queryname NZ_NSLY010000321.155
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000321.155.fna -queryname NZ_NSLY010000321.155
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000321.155.fna -queryname NZ_NSLY010000321.155
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000261.156.fna -queryname NZ_NSLY010000261.156
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000261.156.fna -queryname NZ_NSLY010000261.156
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000261.156.fna -queryname NZ_NSLY010000261.156
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000681.157.fna -queryname NZ_NSLY010000681.157
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000681.157.fna -queryname NZ_NSLY010000681.157
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000681.157.fna -queryname NZ_NSLY010000681.157
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000531.158.fna -queryname NZ_NSLY010000531.158
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000531.158.fna -queryname NZ_NSLY010000531.158
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000531.158.fna -queryname NZ_NSLY010000531.158
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000121.15.fna -queryname NZ_JAEZ010000121.15
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000121.15.fna -queryname NZ_JAEZ010000121.15
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000121.15.fna -queryname NZ_JAEZ010000121.15
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000621.159.fna -queryname NZ_NSLY010000621.159
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000621.159.fna -queryname NZ_NSLY010000621.159
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000621.159.fna -queryname NZ_NSLY010000621.159
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000421.160.fna -queryname NZ_NSLY010000421.160
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000421.160.fna -queryname NZ_NSLY010000421.160
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000421.160.fna -queryname NZ_NSLY010000421.160
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000141.161.fna -queryname NZ_NSLY010000141.161
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000141.161.fna -queryname NZ_NSLY010000141.161
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000141.161.fna -queryname NZ_NSLY010000141.161
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000481.162.fna -queryname NZ_NSLY010000481.162
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000481.162.fna -queryname NZ_NSLY010000481.162
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000481.162.fna -queryname NZ_NSLY010000481.162
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000571.163.fna -queryname NZ_NSLY010000571.163
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000571.163.fna -queryname NZ_NSLY010000571.163
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000571.163.fna -queryname NZ_NSLY010000571.163
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000441.164.fna -queryname NZ_NSLY010000441.164
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000441.164.fna -queryname NZ_NSLY010000441.164
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000441.164.fna -queryname NZ_NSLY010000441.164
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000161.165.fna -queryname NZ_NSLY010000161.165
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000161.165.fna -queryname NZ_NSLY010000161.165
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000161.165.fna -queryname NZ_NSLY010000161.165
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000201.166.fna -queryname NZ_NSLY010000201.166
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000201.166.fna -queryname NZ_NSLY010000201.166
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000201.166.fna -queryname NZ_NSLY010000201.166
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000431.167.fna -queryname NZ_NSLY010000431.167
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000431.167.fna -queryname NZ_NSLY010000431.167
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000431.167.fna -queryname NZ_NSLY010000431.167
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000521.168.fna -queryname NZ_NSLY010000521.168
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000521.168.fna -queryname NZ_NSLY010000521.168
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000521.168.fna -queryname NZ_NSLY010000521.168
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000111.16.fna -queryname NZ_JAEZ010000111.16
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000111.16.fna -queryname NZ_JAEZ010000111.16
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000111.16.fna -queryname NZ_JAEZ010000111.16
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000591.169.fna -queryname NZ_NSLY010000591.169
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000591.169.fna -queryname NZ_NSLY010000591.169
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000591.169.fna -queryname NZ_NSLY010000591.169
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000291.170.fna -queryname NZ_NSLY010000291.170
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000291.170.fna -queryname NZ_NSLY010000291.170
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000291.170.fna -queryname NZ_NSLY010000291.170
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000601.171.fna -queryname NZ_NSLY010000601.171
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000601.171.fna -queryname NZ_NSLY010000601.171
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000601.171.fna -queryname NZ_NSLY010000601.171
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000501.172.fna -queryname NZ_NSLY010000501.172
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000501.172.fna -queryname NZ_NSLY010000501.172
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000501.172.fna -queryname NZ_NSLY010000501.172
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000271.173.fna -queryname NZ_NSLY010000271.173
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000271.173.fna -queryname NZ_NSLY010000271.173
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000271.173.fna -queryname NZ_NSLY010000271.173
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000461.174.fna -queryname NZ_NSLY010000461.174
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000461.174.fna -queryname NZ_NSLY010000461.174
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000461.174.fna -queryname NZ_NSLY010000461.174
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000131.175.fna -queryname NZ_NSLY010000131.175
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000131.175.fna -queryname NZ_NSLY010000131.175
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000131.175.fna -queryname NZ_NSLY010000131.175
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000661.176.fna -queryname NZ_NSLY010000661.176
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000661.176.fna -queryname NZ_NSLY010000661.176
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000661.176.fna -queryname NZ_NSLY010000661.176
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000451.177.fna -queryname NZ_NSLY010000451.177
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000451.177.fna -queryname NZ_NSLY010000451.177
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000451.177.fna -queryname NZ_NSLY010000451.177
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000041.178.fna -queryname NZ_NSLY010000041.178
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000041.178.fna -queryname NZ_NSLY010000041.178
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000041.178.fna -queryname NZ_NSLY010000041.178
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000221.17.fna -queryname NZ_JAEZ010000221.17
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000221.17.fna -queryname NZ_JAEZ010000221.17
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000221.17.fna -queryname NZ_JAEZ010000221.17
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000361.179.fna -queryname NZ_NSLY010000361.179
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000361.179.fna -queryname NZ_NSLY010000361.179
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000361.179.fna -queryname NZ_NSLY010000361.179
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000581.180.fna -queryname NZ_NSLY010000581.180
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000581.180.fna -queryname NZ_NSLY010000581.180
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000581.180.fna -queryname NZ_NSLY010000581.180
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000391.181.fna -queryname NZ_NSLY010000391.181
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000391.181.fna -queryname NZ_NSLY010000391.181
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000391.181.fna -queryname NZ_NSLY010000391.181
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000251.182.fna -queryname NZ_NSLY010000251.182
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000251.182.fna -queryname NZ_NSLY010000251.182
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000251.182.fna -queryname NZ_NSLY010000251.182
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000281.183.fna -queryname NZ_NSLY010000281.183
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000281.183.fna -queryname NZ_NSLY010000281.183
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000281.183.fna -queryname NZ_NSLY010000281.183
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000241.184.fna -queryname NZ_NSLY010000241.184
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000241.184.fna -queryname NZ_NSLY010000241.184
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000241.184.fna -queryname NZ_NSLY010000241.184
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000651.185.fna -queryname NZ_NSLY010000651.185
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000651.185.fna -queryname NZ_NSLY010000651.185
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000651.185.fna -queryname NZ_NSLY010000651.185
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000381.186.fna -queryname NZ_NSLY010000381.186
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000381.186.fna -queryname NZ_NSLY010000381.186
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000381.186.fna -queryname NZ_NSLY010000381.186
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000181.187.fna -queryname NZ_NSLY010000181.187
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000181.187.fna -queryname NZ_NSLY010000181.187
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000181.187.fna -queryname NZ_NSLY010000181.187
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000151.188.fna -queryname NZ_NSLY010000151.188
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000151.188.fna -queryname NZ_NSLY010000151.188
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000151.188.fna -queryname NZ_NSLY010000151.188
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000161.18.fna -queryname NZ_JAEZ010000161.18
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000161.18.fna -queryname NZ_JAEZ010000161.18
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000161.18.fna -queryname NZ_JAEZ010000161.18
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.fna -queryname NZ_NSLY010000111.189
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.fna -queryname NZ_NSLY010000111.189
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000111.189.fna -queryname NZ_NSLY010000111.189
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000551.190.fna -queryname NZ_NSLY010000551.190
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000551.190.fna -queryname NZ_NSLY010000551.190
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLY010000551.190.fna -queryname NZ_NSLY010000551.190
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000601.191.fna -queryname NZ_NSLZ010000601.191
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000601.191.fna -queryname NZ_NSLZ010000601.191
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000601.191.fna -queryname NZ_NSLZ010000601.191
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000581.192.fna -queryname NZ_NSLZ010000581.192
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000581.192.fna -queryname NZ_NSLZ010000581.192
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000581.192.fna -queryname NZ_NSLZ010000581.192
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000741.193.fna -queryname NZ_NSLZ010000741.193
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000741.193.fna -queryname NZ_NSLZ010000741.193
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000741.193.fna -queryname NZ_NSLZ010000741.193
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000241.194.fna -queryname NZ_NSLZ010000241.194
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000241.194.fna -queryname NZ_NSLZ010000241.194
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000241.194.fna -queryname NZ_NSLZ010000241.194
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000701.195.fna -queryname NZ_NSLZ010000701.195
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000701.195.fna -queryname NZ_NSLZ010000701.195
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000701.195.fna -queryname NZ_NSLZ010000701.195
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000351.196.fna -queryname NZ_NSLZ010000351.196
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000351.196.fna -queryname NZ_NSLZ010000351.196
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000351.196.fna -queryname NZ_NSLZ010000351.196
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000751.197.fna -queryname NZ_NSLZ010000751.197
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000751.197.fna -queryname NZ_NSLZ010000751.197
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000751.197.fna -queryname NZ_NSLZ010000751.197
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000291.198.fna -queryname NZ_NSLZ010000291.198
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000291.198.fna -queryname NZ_NSLZ010000291.198
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000291.198.fna -queryname NZ_NSLZ010000291.198
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178601.1.fna -queryname NC_0178601.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178601.1.fna -queryname NC_0178601.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NC_0178601.1.fna -queryname NC_0178601.1
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.fna -queryname NZ_JAEZ010000191.19
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.fna -queryname NZ_JAEZ010000191.19
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.fna -queryname NZ_JAEZ010000191.19
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.AOI.fna -queryname NZ_JAEZ010000191.19
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000191.19.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_JAEZ010000191.19
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_JAEZ010000191.19.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000561.199.fna -queryname NZ_NSLZ010000561.199
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000561.199.fna -queryname NZ_NSLZ010000561.199
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000561.199.fna -queryname NZ_NSLZ010000561.199
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000181.200.fna -queryname NZ_NSLZ010000181.200
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000181.200.fna -queryname NZ_NSLZ010000181.200
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000181.200.fna -queryname NZ_NSLZ010000181.200
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000381.201.fna -queryname NZ_NSLZ010000381.201
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000381.201.fna -queryname NZ_NSLZ010000381.201
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000381.201.fna -queryname NZ_NSLZ010000381.201
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000571.202.fna -queryname NZ_NSLZ010000571.202
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000571.202.fna -queryname NZ_NSLZ010000571.202
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000571.202.fna -queryname NZ_NSLZ010000571.202
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000111.203.fna -queryname NZ_NSLZ010000111.203
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000111.203.fna -queryname NZ_NSLZ010000111.203
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000111.203.fna -queryname NZ_NSLZ010000111.203
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000451.204.fna -queryname NZ_NSLZ010000451.204
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000451.204.fna -queryname NZ_NSLZ010000451.204
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000451.204.fna -queryname NZ_NSLZ010000451.204
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000341.205.fna -queryname NZ_NSLZ010000341.205
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000341.205.fna -queryname NZ_NSLZ010000341.205
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000341.205.fna -queryname NZ_NSLZ010000341.205
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000331.206.fna -queryname NZ_NSLZ010000331.206
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000331.206.fna -queryname NZ_NSLZ010000331.206
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000331.206.fna -queryname NZ_NSLZ010000331.206
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000511.207.fna -queryname NZ_NSLZ010000511.207
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000511.207.fna -queryname NZ_NSLZ010000511.207
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000511.207.fna -queryname NZ_NSLZ010000511.207
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000661.208.fna -queryname NZ_NSLZ010000661.208
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000661.208.fna -queryname NZ_NSLZ010000661.208
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000661.208.fna -queryname NZ_NSLZ010000661.208
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000071.20.fna -queryname NZ_JAEZ010000071.20
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000071.20.fna -queryname NZ_JAEZ010000071.20
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000071.20.fna -queryname NZ_JAEZ010000071.20
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000141.209.fna -queryname NZ_NSLZ010000141.209
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000141.209.fna -queryname NZ_NSLZ010000141.209
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000141.209.fna -queryname NZ_NSLZ010000141.209
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000221.210.fna -queryname NZ_NSLZ010000221.210
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000221.210.fna -queryname NZ_NSLZ010000221.210
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000221.210.fna -queryname NZ_NSLZ010000221.210
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000201.211.fna -queryname NZ_NSLZ010000201.211
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000201.211.fna -queryname NZ_NSLZ010000201.211
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000201.211.fna -queryname NZ_NSLZ010000201.211
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000251.212.fna -queryname NZ_NSLZ010000251.212
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000251.212.fna -queryname NZ_NSLZ010000251.212
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000251.212.fna -queryname NZ_NSLZ010000251.212
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000071.213.fna -queryname NZ_NSLZ010000071.213
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000071.213.fna -queryname NZ_NSLZ010000071.213
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000071.213.fna -queryname NZ_NSLZ010000071.213
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000231.214.fna -queryname NZ_NSLZ010000231.214
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000231.214.fna -queryname NZ_NSLZ010000231.214
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000231.214.fna -queryname NZ_NSLZ010000231.214
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000681.215.fna -queryname NZ_NSLZ010000681.215
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000681.215.fna -queryname NZ_NSLZ010000681.215
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000681.215.fna -queryname NZ_NSLZ010000681.215
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.fna -queryname NZ_NSLZ010000081.216
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.fna -queryname NZ_NSLZ010000081.216
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.fna -queryname NZ_NSLZ010000081.216
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.AOI.fna -queryname NZ_NSLZ010000081.216
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000081.216.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_NSLZ010000081.216
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_NSLZ010000081.216.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000051.217.fna -queryname NZ_NSLZ010000051.217
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000051.217.fna -queryname NZ_NSLZ010000051.217
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000051.217.fna -queryname NZ_NSLZ010000051.217
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000421.218.fna -queryname NZ_NSLZ010000421.218
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000421.218.fna -queryname NZ_NSLZ010000421.218
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000421.218.fna -queryname NZ_NSLZ010000421.218
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000231.21.fna -queryname NZ_JAEZ010000231.21
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000231.21.fna -queryname NZ_JAEZ010000231.21
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000231.21.fna -queryname NZ_JAEZ010000231.21
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000131.219.fna -queryname NZ_NSLZ010000131.219
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000131.219.fna -queryname NZ_NSLZ010000131.219
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000131.219.fna -queryname NZ_NSLZ010000131.219
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000591.220.fna -queryname NZ_NSLZ010000591.220
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000591.220.fna -queryname NZ_NSLZ010000591.220
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000591.220.fna -queryname NZ_NSLZ010000591.220
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.fna -queryname NZ_NSLZ010000021.221
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.fna -queryname NZ_NSLZ010000021.221
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000021.221.fna -queryname NZ_NSLZ010000021.221
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000461.222.fna -queryname NZ_NSLZ010000461.222
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000461.222.fna -queryname NZ_NSLZ010000461.222
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000461.222.fna -queryname NZ_NSLZ010000461.222
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000711.223.fna -queryname NZ_NSLZ010000711.223
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000711.223.fna -queryname NZ_NSLZ010000711.223
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000711.223.fna -queryname NZ_NSLZ010000711.223
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000091.224.fna -queryname NZ_NSLZ010000091.224
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000091.224.fna -queryname NZ_NSLZ010000091.224
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000091.224.fna -queryname NZ_NSLZ010000091.224
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000621.225.fna -queryname NZ_NSLZ010000621.225
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000621.225.fna -queryname NZ_NSLZ010000621.225
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000621.225.fna -queryname NZ_NSLZ010000621.225
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000101.226.fna -queryname NZ_NSLZ010000101.226
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000101.226.fna -queryname NZ_NSLZ010000101.226
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000101.226.fna -queryname NZ_NSLZ010000101.226
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000531.227.fna -queryname NZ_NSLZ010000531.227
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000531.227.fna -queryname NZ_NSLZ010000531.227
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000531.227.fna -queryname NZ_NSLZ010000531.227
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000361.228.fna -queryname NZ_NSLZ010000361.228
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000361.228.fna -queryname NZ_NSLZ010000361.228
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000361.228.fna -queryname NZ_NSLZ010000361.228
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000171.22.fna -queryname NZ_JAEZ010000171.22
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000171.22.fna -queryname NZ_JAEZ010000171.22
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000171.22.fna -queryname NZ_JAEZ010000171.22
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000161.229.fna -queryname NZ_NSLZ010000161.229
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000161.229.fna -queryname NZ_NSLZ010000161.229
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000161.229.fna -queryname NZ_NSLZ010000161.229
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000171.230.fna -queryname NZ_NSLZ010000171.230
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000171.230.fna -queryname NZ_NSLZ010000171.230
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000171.230.fna -queryname NZ_NSLZ010000171.230
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000411.231.fna -queryname NZ_NSLZ010000411.231
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000411.231.fna -queryname NZ_NSLZ010000411.231
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000411.231.fna -queryname NZ_NSLZ010000411.231
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000551.232.fna -queryname NZ_NSLZ010000551.232
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000551.232.fna -queryname NZ_NSLZ010000551.232
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000551.232.fna -queryname NZ_NSLZ010000551.232
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000611.233.fna -queryname NZ_NSLZ010000611.233
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000611.233.fna -queryname NZ_NSLZ010000611.233
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000611.233.fna -queryname NZ_NSLZ010000611.233
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000471.234.fna -queryname NZ_NSLZ010000471.234
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000471.234.fna -queryname NZ_NSLZ010000471.234
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000471.234.fna -queryname NZ_NSLZ010000471.234
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000671.235.fna -queryname NZ_NSLZ010000671.235
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000671.235.fna -queryname NZ_NSLZ010000671.235
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000671.235.fna -queryname NZ_NSLZ010000671.235
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000401.236.fna -queryname NZ_NSLZ010000401.236
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000401.236.fna -queryname NZ_NSLZ010000401.236
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000401.236.fna -queryname NZ_NSLZ010000401.236
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000731.237.fna -queryname NZ_NSLZ010000731.237
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000731.237.fna -queryname NZ_NSLZ010000731.237
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000731.237.fna -queryname NZ_NSLZ010000731.237
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000481.238.fna -queryname NZ_NSLZ010000481.238
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000481.238.fna -queryname NZ_NSLZ010000481.238
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000481.238.fna -queryname NZ_NSLZ010000481.238
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.fna -queryname NZ_ATMK010000011.23
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.fna -queryname NZ_ATMK010000011.23
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.fna -queryname NZ_ATMK010000011.23
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.AOI.fna -queryname NZ_ATMK010000011.23
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000011.23.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_ATMK010000011.23
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_ATMK010000011.23.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000031.239.fna -queryname NZ_NSLZ010000031.239
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000031.239.fna -queryname NZ_NSLZ010000031.239
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000031.239.fna -queryname NZ_NSLZ010000031.239
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000261.240.fna -queryname NZ_NSLZ010000261.240
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000261.240.fna -queryname NZ_NSLZ010000261.240
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000261.240.fna -queryname NZ_NSLZ010000261.240
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000011.241.fna -queryname NZ_NSLZ010000011.241
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000011.241.fna -queryname NZ_NSLZ010000011.241
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000011.241.fna -queryname NZ_NSLZ010000011.241
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000721.242.fna -queryname NZ_NSLZ010000721.242
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000721.242.fna -queryname NZ_NSLZ010000721.242
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000721.242.fna -queryname NZ_NSLZ010000721.242
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000691.243.fna -queryname NZ_NSLZ010000691.243
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000691.243.fna -queryname NZ_NSLZ010000691.243
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000691.243.fna -queryname NZ_NSLZ010000691.243
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000211.244.fna -queryname NZ_NSLZ010000211.244
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000211.244.fna -queryname NZ_NSLZ010000211.244
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000211.244.fna -queryname NZ_NSLZ010000211.244
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000191.245.fna -queryname NZ_NSLZ010000191.245
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000191.245.fna -queryname NZ_NSLZ010000191.245
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000191.245.fna -queryname NZ_NSLZ010000191.245
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000651.246.fna -queryname NZ_NSLZ010000651.246
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000651.246.fna -queryname NZ_NSLZ010000651.246
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000651.246.fna -queryname NZ_NSLZ010000651.246
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000151.247.fna -queryname NZ_NSLZ010000151.247
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000151.247.fna -queryname NZ_NSLZ010000151.247
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000151.247.fna -queryname NZ_NSLZ010000151.247
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000501.248.fna -queryname NZ_NSLZ010000501.248
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000501.248.fna -queryname NZ_NSLZ010000501.248
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000501.248.fna -queryname NZ_NSLZ010000501.248
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000101.24.fna -queryname NZ_ATMK010000101.24
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000101.24.fna -queryname NZ_ATMK010000101.24
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000101.24.fna -queryname NZ_ATMK010000101.24
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000321.249.fna -queryname NZ_NSLZ010000321.249
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000321.249.fna -queryname NZ_NSLZ010000321.249
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000321.249.fna -queryname NZ_NSLZ010000321.249
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000641.250.fna -queryname NZ_NSLZ010000641.250
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000641.250.fna -queryname NZ_NSLZ010000641.250
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000641.250.fna -queryname NZ_NSLZ010000641.250
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000491.251.fna -queryname NZ_NSLZ010000491.251
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000491.251.fna -queryname NZ_NSLZ010000491.251
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000491.251.fna -queryname NZ_NSLZ010000491.251
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000371.252.fna -queryname NZ_NSLZ010000371.252
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000371.252.fna -queryname NZ_NSLZ010000371.252
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000371.252.fna -queryname NZ_NSLZ010000371.252
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000311.253.fna -queryname NZ_NSLZ010000311.253
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000311.253.fna -queryname NZ_NSLZ010000311.253
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000311.253.fna -queryname NZ_NSLZ010000311.253
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000541.254.fna -queryname NZ_NSLZ010000541.254
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000541.254.fna -queryname NZ_NSLZ010000541.254
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000541.254.fna -queryname NZ_NSLZ010000541.254
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000521.255.fna -queryname NZ_NSLZ010000521.255
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000521.255.fna -queryname NZ_NSLZ010000521.255
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000521.255.fna -queryname NZ_NSLZ010000521.255
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000631.256.fna -queryname NZ_NSLZ010000631.256
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000631.256.fna -queryname NZ_NSLZ010000631.256
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000631.256.fna -queryname NZ_NSLZ010000631.256
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000301.257.fna -queryname NZ_NSLZ010000301.257
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000301.257.fna -queryname NZ_NSLZ010000301.257
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000301.257.fna -queryname NZ_NSLZ010000301.257
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000391.258.fna -queryname NZ_NSLZ010000391.258
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000391.258.fna -queryname NZ_NSLZ010000391.258
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000391.258.fna -queryname NZ_NSLZ010000391.258
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000481.25.fna -queryname NZ_ATMK010000481.25
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000481.25.fna -queryname NZ_ATMK010000481.25
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000481.25.fna -queryname NZ_ATMK010000481.25
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000121.259.fna -queryname NZ_NSLZ010000121.259
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000121.259.fna -queryname NZ_NSLZ010000121.259
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000121.259.fna -queryname NZ_NSLZ010000121.259
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000271.260.fna -queryname NZ_NSLZ010000271.260
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000271.260.fna -queryname NZ_NSLZ010000271.260
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000271.260.fna -queryname NZ_NSLZ010000271.260
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000061.261.fna -queryname NZ_NSLZ010000061.261
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000061.261.fna -queryname NZ_NSLZ010000061.261
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000061.261.fna -queryname NZ_NSLZ010000061.261
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000441.262.fna -queryname NZ_NSLZ010000441.262
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000441.262.fna -queryname NZ_NSLZ010000441.262
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000441.262.fna -queryname NZ_NSLZ010000441.262
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000281.263.fna -queryname NZ_NSLZ010000281.263
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000281.263.fna -queryname NZ_NSLZ010000281.263
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000281.263.fna -queryname NZ_NSLZ010000281.263
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000431.264.fna -queryname NZ_NSLZ010000431.264
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000431.264.fna -queryname NZ_NSLZ010000431.264
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000431.264.fna -queryname NZ_NSLZ010000431.264
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000041.265.fna -queryname NZ_NSLZ010000041.265
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000041.265.fna -queryname NZ_NSLZ010000041.265
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSLZ010000041.265.fna -queryname NZ_NSLZ010000041.265
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000241.266.fna -queryname NZ_NSMA010000241.266
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000241.266.fna -queryname NZ_NSMA010000241.266
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000241.266.fna -queryname NZ_NSMA010000241.266
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000201.267.fna -queryname NZ_NSMA010000201.267
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000201.267.fna -queryname NZ_NSMA010000201.267
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000201.267.fna -queryname NZ_NSMA010000201.267
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000301.268.fna -queryname NZ_NSMA010000301.268
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000301.268.fna -queryname NZ_NSMA010000301.268
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000301.268.fna -queryname NZ_NSMA010000301.268
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000141.26.fna -queryname NZ_ATMK010000141.26
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000141.26.fna -queryname NZ_ATMK010000141.26
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000141.26.fna -queryname NZ_ATMK010000141.26
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000151.269.fna -queryname NZ_NSMA010000151.269
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000151.269.fna -queryname NZ_NSMA010000151.269
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000151.269.fna -queryname NZ_NSMA010000151.269
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000291.270.fna -queryname NZ_NSMA010000291.270
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000291.270.fna -queryname NZ_NSMA010000291.270
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000291.270.fna -queryname NZ_NSMA010000291.270
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000371.271.fna -queryname NZ_NSMA010000371.271
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000371.271.fna -queryname NZ_NSMA010000371.271
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000371.271.fna -queryname NZ_NSMA010000371.271
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000351.272.fna -queryname NZ_NSMA010000351.272
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000351.272.fna -queryname NZ_NSMA010000351.272
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000351.272.fna -queryname NZ_NSMA010000351.272
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000101.273.fna -queryname NZ_NSMA010000101.273
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000101.273.fna -queryname NZ_NSMA010000101.273
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000101.273.fna -queryname NZ_NSMA010000101.273
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000091.274.fna -queryname NZ_NSMA010000091.274
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000091.274.fna -queryname NZ_NSMA010000091.274
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000091.274.fna -queryname NZ_NSMA010000091.274
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000221.275.fna -queryname NZ_NSMA010000221.275
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000221.275.fna -queryname NZ_NSMA010000221.275
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000221.275.fna -queryname NZ_NSMA010000221.275
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000211.276.fna -queryname NZ_NSMA010000211.276
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000211.276.fna -queryname NZ_NSMA010000211.276
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000211.276.fna -queryname NZ_NSMA010000211.276
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.fna -queryname NZ_NSMA010000011.277
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.fna -queryname NZ_NSMA010000011.277
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000011.277.fna -queryname NZ_NSMA010000011.277
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000311.278.fna -queryname NZ_NSMA010000311.278
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000311.278.fna -queryname NZ_NSMA010000311.278
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000311.278.fna -queryname NZ_NSMA010000311.278
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000121.27.fna -queryname NZ_ATMK010000121.27
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000121.27.fna -queryname NZ_ATMK010000121.27
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000121.27.fna -queryname NZ_ATMK010000121.27
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000331.279.fna -queryname NZ_NSMA010000331.279
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000331.279.fna -queryname NZ_NSMA010000331.279
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000331.279.fna -queryname NZ_NSMA010000331.279
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000131.280.fna -queryname NZ_NSMA010000131.280
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000131.280.fna -queryname NZ_NSMA010000131.280
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000131.280.fna -queryname NZ_NSMA010000131.280
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000251.281.fna -queryname NZ_NSMA010000251.281
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000251.281.fna -queryname NZ_NSMA010000251.281
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000251.281.fna -queryname NZ_NSMA010000251.281
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000041.282.fna -queryname NZ_NSMA010000041.282
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000041.282.fna -queryname NZ_NSMA010000041.282
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000041.282.fna -queryname NZ_NSMA010000041.282
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000361.283.fna -queryname NZ_NSMA010000361.283
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000361.283.fna -queryname NZ_NSMA010000361.283
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000361.283.fna -queryname NZ_NSMA010000361.283
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000051.284.fna -queryname NZ_NSMA010000051.284
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000051.284.fna -queryname NZ_NSMA010000051.284
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000051.284.fna -queryname NZ_NSMA010000051.284
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000271.285.fna -queryname NZ_NSMA010000271.285
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000271.285.fna -queryname NZ_NSMA010000271.285
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000271.285.fna -queryname NZ_NSMA010000271.285
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000071.286.fna -queryname NZ_NSMA010000071.286
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000071.286.fna -queryname NZ_NSMA010000071.286
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000071.286.fna -queryname NZ_NSMA010000071.286
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000081.287.fna -queryname NZ_NSMA010000081.287
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000081.287.fna -queryname NZ_NSMA010000081.287
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000081.287.fna -queryname NZ_NSMA010000081.287
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000111.288.fna -queryname NZ_NSMA010000111.288
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000111.288.fna -queryname NZ_NSMA010000111.288
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000111.288.fna -queryname NZ_NSMA010000111.288
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000091.28.fna -queryname NZ_ATMK010000091.28
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000091.28.fna -queryname NZ_ATMK010000091.28
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000091.28.fna -queryname NZ_ATMK010000091.28
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000031.289.fna -queryname NZ_NSMA010000031.289
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000031.289.fna -queryname NZ_NSMA010000031.289
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000031.289.fna -queryname NZ_NSMA010000031.289
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000141.290.fna -queryname NZ_NSMA010000141.290
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000141.290.fna -queryname NZ_NSMA010000141.290
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000141.290.fna -queryname NZ_NSMA010000141.290
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000181.291.fna -queryname NZ_NSMA010000181.291
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000181.291.fna -queryname NZ_NSMA010000181.291
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000181.291.fna -queryname NZ_NSMA010000181.291
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.fna -queryname NZ_NSMA010000171.292
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.fna -queryname NZ_NSMA010000171.292
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.fna -queryname NZ_NSMA010000171.292
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.AOI.fna -queryname NZ_NSMA010000171.292
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000171.292.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_NSMA010000171.292
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_NSMA010000171.292.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000381.293.fna -queryname NZ_NSMA010000381.293
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000381.293.fna -queryname NZ_NSMA010000381.293
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000381.293.fna -queryname NZ_NSMA010000381.293
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000261.294.fna -queryname NZ_NSMA010000261.294
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000261.294.fna -queryname NZ_NSMA010000261.294
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000261.294.fna -queryname NZ_NSMA010000261.294
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000061.295.fna -queryname NZ_NSMA010000061.295
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000061.295.fna -queryname NZ_NSMA010000061.295
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000061.295.fna -queryname NZ_NSMA010000061.295
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000161.296.fna -queryname NZ_NSMA010000161.296
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000161.296.fna -queryname NZ_NSMA010000161.296
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000161.296.fna -queryname NZ_NSMA010000161.296
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000021.297.fna -queryname NZ_NSMA010000021.297
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000021.297.fna -queryname NZ_NSMA010000021.297
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000021.297.fna -queryname NZ_NSMA010000021.297
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000391.298.fna -queryname NZ_NSMA010000391.298
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000391.298.fna -queryname NZ_NSMA010000391.298
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000391.298.fna -queryname NZ_NSMA010000391.298
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000181.2.fna -queryname NZ_JAEZ010000181.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000181.2.fna -queryname NZ_JAEZ010000181.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000181.2.fna -queryname NZ_JAEZ010000181.2
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000401.29.fna -queryname NZ_ATMK010000401.29
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000401.29.fna -queryname NZ_ATMK010000401.29
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000401.29.fna -queryname NZ_ATMK010000401.29
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000121.299.fna -queryname NZ_NSMA010000121.299
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000121.299.fna -queryname NZ_NSMA010000121.299
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000121.299.fna -queryname NZ_NSMA010000121.299
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000321.300.fna -queryname NZ_NSMA010000321.300
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000321.300.fna -queryname NZ_NSMA010000321.300
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000321.300.fna -queryname NZ_NSMA010000321.300
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000281.301.fna -queryname NZ_NSMA010000281.301
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000281.301.fna -queryname NZ_NSMA010000281.301
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000281.301.fna -queryname NZ_NSMA010000281.301
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000191.302.fna -queryname NZ_NSMA010000191.302
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000191.302.fna -queryname NZ_NSMA010000191.302
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000191.302.fna -queryname NZ_NSMA010000191.302
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000231.303.fna -queryname NZ_NSMA010000231.303
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000231.303.fna -queryname NZ_NSMA010000231.303
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000231.303.fna -queryname NZ_NSMA010000231.303
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000341.304.fna -queryname NZ_NSMA010000341.304
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000341.304.fna -queryname NZ_NSMA010000341.304
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_NSMA010000341.304.fna -queryname NZ_NSMA010000341.304
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.fna -queryname NZ_PEKN010000011.305
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.fna -queryname NZ_PEKN010000011.305
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.fna -queryname NZ_PEKN010000011.305
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.AOI.fna -queryname NZ_PEKN010000011.305
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000011.305.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PEKN010000011.305
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PEKN010000011.305.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000021.306.fna -queryname NZ_PEKN010000021.306
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000021.306.fna -queryname NZ_PEKN010000021.306
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKN010000021.306.fna -queryname NZ_PEKN010000021.306
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000021.307.fna -queryname NZ_PEKM010000021.307
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000021.307.fna -queryname NZ_PEKM010000021.307
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000021.307.fna -queryname NZ_PEKM010000021.307
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.fna -queryname NZ_PEKM010000011.308
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.fna -queryname NZ_PEKM010000011.308
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.fna -queryname NZ_PEKM010000011.308
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.AOI.fna -queryname NZ_PEKM010000011.308
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000011.308.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PEKM010000011.308
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PEKM010000011.308.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000211.30.fna -queryname NZ_ATMK010000211.30
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000211.30.fna -queryname NZ_ATMK010000211.30
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000211.30.fna -queryname NZ_ATMK010000211.30
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000031.309.fna -queryname NZ_PEKM010000031.309
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000031.309.fna -queryname NZ_PEKM010000031.309
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000031.309.fna -queryname NZ_PEKM010000031.309
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000041.310.fna -queryname NZ_PEKM010000041.310
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000041.310.fna -queryname NZ_PEKM010000041.310
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PEKM010000041.310.fna -queryname NZ_PEKM010000041.310
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000021.311.fna -queryname NZ_PESN010000021.311
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000021.311.fna -queryname NZ_PESN010000021.311
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000021.311.fna -queryname NZ_PESN010000021.311
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.fna -queryname NZ_PESN010000011.312
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.fna -queryname NZ_PESN010000011.312
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.fna -queryname NZ_PESN010000011.312
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.AOI.fna -queryname NZ_PESN010000011.312
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000011.312.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PESN010000011.312
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PESN010000011.312.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000031.313.fna -queryname NZ_PESN010000031.313
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000031.313.fna -queryname NZ_PESN010000031.313
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PESN010000031.313.fna -queryname NZ_PESN010000031.313
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.fna -queryname NZ_CP0246961.314
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.fna -queryname NZ_CP0246961.314
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.fna -queryname NZ_CP0246961.314
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.AOI.fna -queryname NZ_CP0246961.314
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246961.314.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0246961.314
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0246961.314.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246971.315.fna -queryname NZ_CP0246971.315
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246971.315.AOI.fna -queryname NZ_CP0246971.315
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/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0246971.315.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0246971.315
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0246971.315.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247281.316.fna -queryname NZ_CP0247281.316
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247271.317.fna -queryname NZ_CP0247271.317
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247271.317.AOI.fna -queryname NZ_CP0247271.317
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/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247271.317.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247231.318.fna -queryname NZ_CP0247231.318
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247231.318.AOI.fna -queryname NZ_CP0247231.318
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247231.318.AOI.fna
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0247231.318
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247231.318.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000301.31.fna -queryname NZ_ATMK010000301.31
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000301.31.fna -queryname NZ_ATMK010000301.31
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247241.319.fna -queryname NZ_CP0247241.319
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247241.319.fna -queryname NZ_CP0247241.319
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247261.320.fna -queryname NZ_CP0247261.320
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/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247251.321.fna -queryname NZ_CP0247251.321
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/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247251.321.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247251.321.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0247251.321
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247251.321.GeneTables
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247301.322.fna -queryname NZ_CP0247301.322
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247301.322.fna -queryname NZ_CP0247301.322
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247291.323.fna -queryname NZ_CP0247291.323
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0247291.323
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247291.323.GeneTables
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247331.324.fna -queryname NZ_CP0247331.324
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.fna -queryname NZ_CP0247321.325
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247321.325.AOI.fna -queryname NZ_CP0247321.325
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0247321.325
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247321.325.GeneTables
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247341.326.AOI.fna -queryname NZ_CP0247341.326
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0247341.326
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0247341.326.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0247351.327.fna -queryname NZ_CP0247351.327
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/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.fna -queryname NZ_PGGD010000011.328
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000011.328.AOI.fna -queryname NZ_PGGD010000011.328
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PGGD010000011.328
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PGGD010000011.328.GeneTables
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000191.32.fna -queryname NZ_ATMK010000191.32
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/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_ATMK010000191.32
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_ATMK010000191.32.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000021.329.fna -queryname NZ_PGGD010000021.329
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000021.329.fna -queryname NZ_PGGD010000021.329
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PGGD010000031.330.fna -queryname NZ_PGGD010000031.330
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/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000011.331.fna -queryname NZ_PENE010000011.331
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/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000011.331.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000011.331.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PENE010000011.331
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PENE010000011.331.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000021.332.fna -queryname NZ_PENE010000021.332
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000021.332.fna -queryname NZ_PENE010000021.332
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENE010000021.332.fna -queryname NZ_PENE010000021.332
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.fna -queryname NZ_PENF010000021.333
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.fna -queryname NZ_PENF010000021.333
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000021.333.fna -queryname NZ_PENF010000021.333
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.fna -queryname NZ_PENF010000011.334
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.fna -queryname NZ_PENF010000011.334
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.fna -queryname NZ_PENF010000011.334
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.AOI.fna -queryname NZ_PENF010000011.334
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENF010000011.334.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PENF010000011.334
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PENF010000011.334.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000031.335.fna -queryname NZ_PENH010000031.335
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000031.335.fna -queryname NZ_PENH010000031.335
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000031.335.fna -queryname NZ_PENH010000031.335
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000041.336.fna -queryname NZ_PENH010000041.336
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000041.336.fna -queryname NZ_PENH010000041.336
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000041.336.fna -queryname NZ_PENH010000041.336
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000021.337.fna -queryname NZ_PENH010000021.337
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000021.337.fna -queryname NZ_PENH010000021.337
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000021.337.fna -queryname NZ_PENH010000021.337
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.fna -queryname NZ_PENH010000011.338
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.fna -queryname NZ_PENH010000011.338
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.fna -queryname NZ_PENH010000011.338
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.AOI.fna -queryname NZ_PENH010000011.338
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENH010000011.338.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PENH010000011.338
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PENH010000011.338.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000431.33.fna -queryname NZ_ATMK010000431.33
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000431.33.fna -queryname NZ_ATMK010000431.33
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000431.33.fna -queryname NZ_ATMK010000431.33
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.fna -queryname NZ_PENG010000011.339
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.fna -queryname NZ_PENG010000011.339
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.fna -queryname NZ_PENG010000011.339
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.AOI.fna -queryname NZ_PENG010000011.339
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000011.339.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_PENG010000011.339
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_PENG010000011.339.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000031.340.fna -queryname NZ_PENG010000031.340
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000031.340.fna -queryname NZ_PENG010000031.340
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000031.340.fna -queryname NZ_PENG010000031.340
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.fna -queryname NZ_PENG010000021.341
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.fna -queryname NZ_PENG010000021.341
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_PENG010000021.341.fna -queryname NZ_PENG010000021.341
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.fna -queryname NZ_CP0300941.342
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.fna -queryname NZ_CP0300941.342
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.fna -queryname NZ_CP0300941.342
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.AOI.fna -queryname NZ_CP0300941.342
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300941.342.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_CP0300941.342
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_CP0300941.342.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300951.343.fna -queryname NZ_CP0300951.343
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300951.343.fna -queryname NZ_CP0300951.343
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_CP0300951.343.fna -queryname NZ_CP0300951.343
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000191.344.fna -queryname NZ_QXEM010000191.344
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000191.344.fna -queryname NZ_QXEM010000191.344
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000191.344.fna -queryname NZ_QXEM010000191.344
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000241.345.fna -queryname NZ_QXEM010000241.345
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000241.345.fna -queryname NZ_QXEM010000241.345
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000241.345.fna -queryname NZ_QXEM010000241.345
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000381.346.fna -queryname NZ_QXEM010000381.346
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000381.346.fna -queryname NZ_QXEM010000381.346
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000381.346.fna -queryname NZ_QXEM010000381.346
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000391.347.fna -queryname NZ_QXEM010000391.347
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000391.347.fna -queryname NZ_QXEM010000391.347
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000391.347.fna -queryname NZ_QXEM010000391.347
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000151.348.fna -queryname NZ_QXEM010000151.348
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000151.348.fna -queryname NZ_QXEM010000151.348
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000151.348.fna -queryname NZ_QXEM010000151.348
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000181.34.fna -queryname NZ_ATMK010000181.34
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000181.34.fna -queryname NZ_ATMK010000181.34
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000181.34.fna -queryname NZ_ATMK010000181.34
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000401.349.fna -queryname NZ_QXEM010000401.349
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000401.349.fna -queryname NZ_QXEM010000401.349
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000401.349.fna -queryname NZ_QXEM010000401.349
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000321.350.fna -queryname NZ_QXEM010000321.350
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000321.350.fna -queryname NZ_QXEM010000321.350
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000321.350.fna -queryname NZ_QXEM010000321.350
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000261.351.fna -queryname NZ_QXEM010000261.351
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000261.351.fna -queryname NZ_QXEM010000261.351
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000261.351.fna -queryname NZ_QXEM010000261.351
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000171.352.fna -queryname NZ_QXEM010000171.352
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000171.352.fna -queryname NZ_QXEM010000171.352
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000171.352.fna -queryname NZ_QXEM010000171.352
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000431.353.fna -queryname NZ_QXEM010000431.353
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000431.353.fna -queryname NZ_QXEM010000431.353
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000431.353.fna -queryname NZ_QXEM010000431.353
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000371.354.fna -queryname NZ_QXEM010000371.354
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000371.354.fna -queryname NZ_QXEM010000371.354
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000371.354.fna -queryname NZ_QXEM010000371.354
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000341.355.fna -queryname NZ_QXEM010000341.355
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000341.355.fna -queryname NZ_QXEM010000341.355
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000341.355.fna -queryname NZ_QXEM010000341.355
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000041.356.fna -queryname NZ_QXEM010000041.356
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000041.356.fna -queryname NZ_QXEM010000041.356
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000041.356.fna -queryname NZ_QXEM010000041.356
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000211.357.fna -queryname NZ_QXEM010000211.357
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000211.357.fna -queryname NZ_QXEM010000211.357
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000211.357.fna -queryname NZ_QXEM010000211.357
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000091.358.fna -queryname NZ_QXEM010000091.358
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000091.358.fna -queryname NZ_QXEM010000091.358
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000091.358.fna -queryname NZ_QXEM010000091.358
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000421.35.fna -queryname NZ_ATMK010000421.35
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000421.35.fna -queryname NZ_ATMK010000421.35
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000421.35.fna -queryname NZ_ATMK010000421.35
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.fna -queryname NZ_QXEM010000131.359
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.fna -queryname NZ_QXEM010000131.359
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.fna -queryname NZ_QXEM010000131.359
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.AOI.fna -queryname NZ_QXEM010000131.359
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000131.359.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_QXEM010000131.359
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_QXEM010000131.359.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000011.360.fna -queryname NZ_QXEM010000011.360
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000011.360.fna -queryname NZ_QXEM010000011.360
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000011.360.fna -queryname NZ_QXEM010000011.360
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000111.361.fna -queryname NZ_QXEM010000111.361
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000111.361.fna -queryname NZ_QXEM010000111.361
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000111.361.fna -queryname NZ_QXEM010000111.361
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000051.362.fna -queryname NZ_QXEM010000051.362
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000051.362.fna -queryname NZ_QXEM010000051.362
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000051.362.fna -queryname NZ_QXEM010000051.362
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000081.363.fna -queryname NZ_QXEM010000081.363
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000081.363.fna -queryname NZ_QXEM010000081.363
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000081.363.fna -queryname NZ_QXEM010000081.363
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000301.364.fna -queryname NZ_QXEM010000301.364
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000301.364.fna -queryname NZ_QXEM010000301.364
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000301.364.fna -queryname NZ_QXEM010000301.364
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000071.365.fna -queryname NZ_QXEM010000071.365
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000071.365.fna -queryname NZ_QXEM010000071.365
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000071.365.fna -queryname NZ_QXEM010000071.365
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000201.366.fna -queryname NZ_QXEM010000201.366
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000201.366.fna -queryname NZ_QXEM010000201.366
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000201.366.fna -queryname NZ_QXEM010000201.366
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000031.367.fna -queryname NZ_QXEM010000031.367
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000031.367.fna -queryname NZ_QXEM010000031.367
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000031.367.fna -queryname NZ_QXEM010000031.367
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000291.368.fna -queryname NZ_QXEM010000291.368
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000291.368.fna -queryname NZ_QXEM010000291.368
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000291.368.fna -queryname NZ_QXEM010000291.368
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000131.36.fna -queryname NZ_ATMK010000131.36
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000131.36.fna -queryname NZ_ATMK010000131.36
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000131.36.fna -queryname NZ_ATMK010000131.36
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000101.369.fna -queryname NZ_QXEM010000101.369
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000101.369.fna -queryname NZ_QXEM010000101.369
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000101.369.fna -queryname NZ_QXEM010000101.369
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000271.370.fna -queryname NZ_QXEM010000271.370
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000271.370.fna -queryname NZ_QXEM010000271.370
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000271.370.fna -queryname NZ_QXEM010000271.370
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000331.371.fna -queryname NZ_QXEM010000331.371
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000331.371.fna -queryname NZ_QXEM010000331.371
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000331.371.fna -queryname NZ_QXEM010000331.371
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000141.372.fna -queryname NZ_QXEM010000141.372
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000141.372.fna -queryname NZ_QXEM010000141.372
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000141.372.fna -queryname NZ_QXEM010000141.372
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000161.373.fna -queryname NZ_QXEM010000161.373
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000161.373.fna -queryname NZ_QXEM010000161.373
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000161.373.fna -queryname NZ_QXEM010000161.373
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000351.374.fna -queryname NZ_QXEM010000351.374
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000351.374.fna -queryname NZ_QXEM010000351.374
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000351.374.fna -queryname NZ_QXEM010000351.374
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000311.375.fna -queryname NZ_QXEM010000311.375
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000311.375.fna -queryname NZ_QXEM010000311.375
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000311.375.fna -queryname NZ_QXEM010000311.375
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000421.376.fna -queryname NZ_QXEM010000421.376
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000421.376.fna -queryname NZ_QXEM010000421.376
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000421.376.fna -queryname NZ_QXEM010000421.376
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000411.377.fna -queryname NZ_QXEM010000411.377
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000411.377.fna -queryname NZ_QXEM010000411.377
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000411.377.fna -queryname NZ_QXEM010000411.377
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000121.378.fna -queryname NZ_QXEM010000121.378
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000121.378.fna -queryname NZ_QXEM010000121.378
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000121.378.fna -queryname NZ_QXEM010000121.378
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000081.37.fna -queryname NZ_ATMK010000081.37
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000081.37.fna -queryname NZ_ATMK010000081.37
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000081.37.fna -queryname NZ_ATMK010000081.37
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000281.379.fna -queryname NZ_QXEM010000281.379
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000281.379.fna -queryname NZ_QXEM010000281.379
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000281.379.fna -queryname NZ_QXEM010000281.379
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000231.380.fna -queryname NZ_QXEM010000231.380
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000231.380.fna -queryname NZ_QXEM010000231.380
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000231.380.fna -queryname NZ_QXEM010000231.380
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000441.381.fna -queryname NZ_QXEM010000441.381
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000441.381.fna -queryname NZ_QXEM010000441.381
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000441.381.fna -queryname NZ_QXEM010000441.381
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000061.382.fna -queryname NZ_QXEM010000061.382
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000061.382.fna -queryname NZ_QXEM010000061.382
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000061.382.fna -queryname NZ_QXEM010000061.382
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000181.383.fna -queryname NZ_QXEM010000181.383
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000181.383.fna -queryname NZ_QXEM010000181.383
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000181.383.fna -queryname NZ_QXEM010000181.383
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000221.384.fna -queryname NZ_QXEM010000221.384
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000221.384.fna -queryname NZ_QXEM010000221.384
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000221.384.fna -queryname NZ_QXEM010000221.384
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000251.385.fna -queryname NZ_QXEM010000251.385
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000251.385.fna -queryname NZ_QXEM010000251.385
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000251.385.fna -queryname NZ_QXEM010000251.385
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000361.386.fna -queryname NZ_QXEM010000361.386
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000361.386.fna -queryname NZ_QXEM010000361.386
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000361.386.fna -queryname NZ_QXEM010000361.386
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000481.387.fna -queryname NZ_QXEM010000481.387
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000481.387.fna -queryname NZ_QXEM010000481.387
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000481.387.fna -queryname NZ_QXEM010000481.387
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000021.388.fna -queryname NZ_QXEM010000021.388
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000021.388.fna -queryname NZ_QXEM010000021.388
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEM010000021.388.fna -queryname NZ_QXEM010000021.388
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000051.38.fna -queryname NZ_ATMK010000051.38
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000051.38.fna -queryname NZ_ATMK010000051.38
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000051.38.fna -queryname NZ_ATMK010000051.38
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000361.389.fna -queryname NZ_QXEN010000361.389
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000361.389.fna -queryname NZ_QXEN010000361.389
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000361.389.fna -queryname NZ_QXEN010000361.389
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000201.390.fna -queryname NZ_QXEN010000201.390
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000201.390.fna -queryname NZ_QXEN010000201.390
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000201.390.fna -queryname NZ_QXEN010000201.390
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000431.391.fna -queryname NZ_QXEN010000431.391
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000431.391.fna -queryname NZ_QXEN010000431.391
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000431.391.fna -queryname NZ_QXEN010000431.391
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.fna -queryname NZ_QXEN010000131.392
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.fna -queryname NZ_QXEN010000131.392
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.fna -queryname NZ_QXEN010000131.392
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.AOI.fna -queryname NZ_QXEN010000131.392
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000131.392.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_QXEN010000131.392
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_QXEN010000131.392.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000161.393.fna -queryname NZ_QXEN010000161.393
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000161.393.fna -queryname NZ_QXEN010000161.393
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000161.393.fna -queryname NZ_QXEN010000161.393
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.fna -queryname NZ_QXEN010000011.394
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.fna -queryname NZ_QXEN010000011.394
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000011.394.fna -queryname NZ_QXEN010000011.394
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000071.395.fna -queryname NZ_QXEN010000071.395
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000071.395.fna -queryname NZ_QXEN010000071.395
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000071.395.fna -queryname NZ_QXEN010000071.395
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000141.396.fna -queryname NZ_QXEN010000141.396
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000141.396.fna -queryname NZ_QXEN010000141.396
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000141.396.fna -queryname NZ_QXEN010000141.396
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000081.397.fna -queryname NZ_QXEN010000081.397
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000081.397.fna -queryname NZ_QXEN010000081.397
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000081.397.fna -queryname NZ_QXEN010000081.397
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000121.398.fna -queryname NZ_QXEN010000121.398
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000121.398.fna -queryname NZ_QXEN010000121.398
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000121.398.fna -queryname NZ_QXEN010000121.398
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125931.3.fna -queryname NZ_KI9125931.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125931.3.fna -queryname NZ_KI9125931.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125931.3.fna -queryname NZ_KI9125931.3
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000291.39.fna -queryname NZ_ATMK010000291.39
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000291.39.fna -queryname NZ_ATMK010000291.39
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000291.39.fna -queryname NZ_ATMK010000291.39
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000371.399.fna -queryname NZ_QXEN010000371.399
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000371.399.fna -queryname NZ_QXEN010000371.399
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000371.399.fna -queryname NZ_QXEN010000371.399
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000251.400.fna -queryname NZ_QXEN010000251.400
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000251.400.fna -queryname NZ_QXEN010000251.400
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000251.400.fna -queryname NZ_QXEN010000251.400
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000091.401.fna -queryname NZ_QXEN010000091.401
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000091.401.fna -queryname NZ_QXEN010000091.401
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000091.401.fna -queryname NZ_QXEN010000091.401
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000391.402.fna -queryname NZ_QXEN010000391.402
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000391.402.fna -queryname NZ_QXEN010000391.402
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000391.402.fna -queryname NZ_QXEN010000391.402
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000381.403.fna -queryname NZ_QXEN010000381.403
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000381.403.fna -queryname NZ_QXEN010000381.403
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000381.403.fna -queryname NZ_QXEN010000381.403
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000311.404.fna -queryname NZ_QXEN010000311.404
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000311.404.fna -queryname NZ_QXEN010000311.404
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000311.404.fna -queryname NZ_QXEN010000311.404
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000191.405.fna -queryname NZ_QXEN010000191.405
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000191.405.fna -queryname NZ_QXEN010000191.405
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000191.405.fna -queryname NZ_QXEN010000191.405
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000221.406.fna -queryname NZ_QXEN010000221.406
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000221.406.fna -queryname NZ_QXEN010000221.406
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000221.406.fna -queryname NZ_QXEN010000221.406
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000171.407.fna -queryname NZ_QXEN010000171.407
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000171.407.fna -queryname NZ_QXEN010000171.407
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000171.407.fna -queryname NZ_QXEN010000171.407
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000151.408.fna -queryname NZ_QXEN010000151.408
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000151.408.fna -queryname NZ_QXEN010000151.408
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000151.408.fna -queryname NZ_QXEN010000151.408
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000461.40.fna -queryname NZ_ATMK010000461.40
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000461.40.fna -queryname NZ_ATMK010000461.40
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000461.40.fna -queryname NZ_ATMK010000461.40
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000051.409.fna -queryname NZ_QXEN010000051.409
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000051.409.fna -queryname NZ_QXEN010000051.409
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000051.409.fna -queryname NZ_QXEN010000051.409
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000281.410.fna -queryname NZ_QXEN010000281.410
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000281.410.fna -queryname NZ_QXEN010000281.410
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000281.410.fna -queryname NZ_QXEN010000281.410
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000341.411.fna -queryname NZ_QXEN010000341.411
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000341.411.fna -queryname NZ_QXEN010000341.411
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000341.411.fna -queryname NZ_QXEN010000341.411
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000291.412.fna -queryname NZ_QXEN010000291.412
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000291.412.fna -queryname NZ_QXEN010000291.412
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000291.412.fna -queryname NZ_QXEN010000291.412
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000401.413.fna -queryname NZ_QXEN010000401.413
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000401.413.fna -queryname NZ_QXEN010000401.413
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000401.413.fna -queryname NZ_QXEN010000401.413
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000351.414.fna -queryname NZ_QXEN010000351.414
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000351.414.fna -queryname NZ_QXEN010000351.414
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000351.414.fna -queryname NZ_QXEN010000351.414
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000211.415.fna -queryname NZ_QXEN010000211.415
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000211.415.fna -queryname NZ_QXEN010000211.415
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000211.415.fna -queryname NZ_QXEN010000211.415
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000301.416.fna -queryname NZ_QXEN010000301.416
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000301.416.fna -queryname NZ_QXEN010000301.416
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000301.416.fna -queryname NZ_QXEN010000301.416
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000031.417.fna -queryname NZ_QXEN010000031.417
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000031.417.fna -queryname NZ_QXEN010000031.417
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000031.417.fna -queryname NZ_QXEN010000031.417
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000321.418.fna -queryname NZ_QXEN010000321.418
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000321.418.fna -queryname NZ_QXEN010000321.418
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000321.418.fna -queryname NZ_QXEN010000321.418
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000151.41.fna -queryname NZ_ATMK010000151.41
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000151.41.fna -queryname NZ_ATMK010000151.41
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000151.41.fna -queryname NZ_ATMK010000151.41
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000101.419.fna -queryname NZ_QXEN010000101.419
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000101.419.fna -queryname NZ_QXEN010000101.419
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000101.419.fna -queryname NZ_QXEN010000101.419
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000181.420.fna -queryname NZ_QXEN010000181.420
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000181.420.fna -queryname NZ_QXEN010000181.420
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000181.420.fna -queryname NZ_QXEN010000181.420
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000241.421.fna -queryname NZ_QXEN010000241.421
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000241.421.fna -queryname NZ_QXEN010000241.421
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000241.421.fna -queryname NZ_QXEN010000241.421
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000061.422.fna -queryname NZ_QXEN010000061.422
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000061.422.fna -queryname NZ_QXEN010000061.422
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000061.422.fna -queryname NZ_QXEN010000061.422
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000231.423.fna -queryname NZ_QXEN010000231.423
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000231.423.fna -queryname NZ_QXEN010000231.423
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000231.423.fna -queryname NZ_QXEN010000231.423
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000421.424.fna -queryname NZ_QXEN010000421.424
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000421.424.fna -queryname NZ_QXEN010000421.424
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000421.424.fna -queryname NZ_QXEN010000421.424
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000411.425.fna -queryname NZ_QXEN010000411.425
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000411.425.fna -queryname NZ_QXEN010000411.425
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000411.425.fna -queryname NZ_QXEN010000411.425
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000261.426.fna -queryname NZ_QXEN010000261.426
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000261.426.fna -queryname NZ_QXEN010000261.426
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000261.426.fna -queryname NZ_QXEN010000261.426
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000331.427.fna -queryname NZ_QXEN010000331.427
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000331.427.fna -queryname NZ_QXEN010000331.427
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000331.427.fna -queryname NZ_QXEN010000331.427
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000271.428.fna -queryname NZ_QXEN010000271.428
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000271.428.fna -queryname NZ_QXEN010000271.428
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000271.428.fna -queryname NZ_QXEN010000271.428
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000471.42.fna -queryname NZ_ATMK010000471.42
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000471.42.fna -queryname NZ_ATMK010000471.42
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000471.42.fna -queryname NZ_ATMK010000471.42
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000111.429.fna -queryname NZ_QXEN010000111.429
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000111.429.fna -queryname NZ_QXEN010000111.429
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000111.429.fna -queryname NZ_QXEN010000111.429
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000021.430.fna -queryname NZ_QXEN010000021.430
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000021.430.fna -queryname NZ_QXEN010000021.430
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000021.430.fna -queryname NZ_QXEN010000021.430
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000041.431.fna -queryname NZ_QXEN010000041.431
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000041.431.fna -queryname NZ_QXEN010000041.431
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_QXEN010000041.431.fna -queryname NZ_QXEN010000041.431
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000021.432.fna -queryname NZ_UGTO010000021.432
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000021.432.fna -queryname NZ_UGTO010000021.432
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000021.432.fna -queryname NZ_UGTO010000021.432
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.fna -queryname NZ_UGTO010000011.433
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.fna -queryname NZ_UGTO010000011.433
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.fna -queryname NZ_UGTO010000011.433
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.AOI.fna -queryname NZ_UGTO010000011.433
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_UGTO010000011.433.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_UGTO010000011.433
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_UGTO010000011.433.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.fna -queryname NZ_ATMK010000021.43
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.fna -queryname NZ_ATMK010000021.43
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000021.43.fna -queryname NZ_ATMK010000021.43
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000491.44.fna -queryname NZ_ATMK010000491.44
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000491.44.fna -queryname NZ_ATMK010000491.44
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000491.44.fna -queryname NZ_ATMK010000491.44
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000111.45.fna -queryname NZ_ATMK010000111.45
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000111.45.fna -queryname NZ_ATMK010000111.45
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000111.45.fna -queryname NZ_ATMK010000111.45
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000031.46.fna -queryname NZ_ATMK010000031.46
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000031.46.fna -queryname NZ_ATMK010000031.46
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000031.46.fna -queryname NZ_ATMK010000031.46
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000281.47.fna -queryname NZ_ATMK010000281.47
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000281.47.fna -queryname NZ_ATMK010000281.47
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000281.47.fna -queryname NZ_ATMK010000281.47
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000441.48.fna -queryname NZ_ATMK010000441.48
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000441.48.fna -queryname NZ_ATMK010000441.48
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000441.48.fna -queryname NZ_ATMK010000441.48
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000141.4.fna -queryname NZ_JAEZ010000141.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000141.4.fna -queryname NZ_JAEZ010000141.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000141.4.fna -queryname NZ_JAEZ010000141.4
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000041.49.fna -queryname NZ_ATMK010000041.49
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000041.49.fna -queryname NZ_ATMK010000041.49
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000041.49.fna -queryname NZ_ATMK010000041.49
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000071.50.fna -queryname NZ_ATMK010000071.50
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000071.50.fna -queryname NZ_ATMK010000071.50
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000071.50.fna -queryname NZ_ATMK010000071.50
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000271.51.fna -queryname NZ_ATMK010000271.51
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000271.51.fna -queryname NZ_ATMK010000271.51
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000271.51.fna -queryname NZ_ATMK010000271.51
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000201.52.fna -queryname NZ_ATMK010000201.52
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000201.52.fna -queryname NZ_ATMK010000201.52
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000201.52.fna -queryname NZ_ATMK010000201.52
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000061.53.fna -queryname NZ_ATMK010000061.53
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000061.53.fna -queryname NZ_ATMK010000061.53
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000061.53.fna -queryname NZ_ATMK010000061.53
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000221.54.fna -queryname NZ_ATMK010000221.54
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000221.54.fna -queryname NZ_ATMK010000221.54
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000221.54.fna -queryname NZ_ATMK010000221.54
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000521.55.fna -queryname NZ_ATMK010000521.55
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000521.55.fna -queryname NZ_ATMK010000521.55
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000521.55.fna -queryname NZ_ATMK010000521.55
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000311.56.fna -queryname NZ_ATMK010000311.56
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000311.56.fna -queryname NZ_ATMK010000311.56
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000311.56.fna -queryname NZ_ATMK010000311.56
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000161.57.fna -queryname NZ_ATMK010000161.57
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000161.57.fna -queryname NZ_ATMK010000161.57
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000161.57.fna -queryname NZ_ATMK010000161.57
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000351.58.fna -queryname NZ_ATMK010000351.58
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000351.58.fna -queryname NZ_ATMK010000351.58
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000351.58.fna -queryname NZ_ATMK010000351.58
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125921.5.fna -queryname NZ_KI9125921.5
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125921.5.fna -queryname NZ_KI9125921.5
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125921.5.fna -queryname NZ_KI9125921.5
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000321.59.fna -queryname NZ_ATMK010000321.59
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000321.59.fna -queryname NZ_ATMK010000321.59
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000321.59.fna -queryname NZ_ATMK010000321.59
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000361.60.fna -queryname NZ_ATMK010000361.60
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000361.60.fna -queryname NZ_ATMK010000361.60
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000361.60.fna -queryname NZ_ATMK010000361.60
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000231.61.fna -queryname NZ_ATMK010000231.61
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000231.61.fna -queryname NZ_ATMK010000231.61
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000231.61.fna -queryname NZ_ATMK010000231.61
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000331.62.fna -queryname NZ_ATMK010000331.62
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000331.62.fna -queryname NZ_ATMK010000331.62
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000331.62.fna -queryname NZ_ATMK010000331.62
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000371.63.fna -queryname NZ_ATMK010000371.63
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000371.63.fna -queryname NZ_ATMK010000371.63
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000371.63.fna -queryname NZ_ATMK010000371.63
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000511.64.fna -queryname NZ_ATMK010000511.64
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000511.64.fna -queryname NZ_ATMK010000511.64
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000511.64.fna -queryname NZ_ATMK010000511.64
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000391.65.fna -queryname NZ_ATMK010000391.65
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000391.65.fna -queryname NZ_ATMK010000391.65
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000391.65.fna -queryname NZ_ATMK010000391.65
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000171.66.fna -queryname NZ_ATMK010000171.66
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000171.66.fna -queryname NZ_ATMK010000171.66
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000171.66.fna -queryname NZ_ATMK010000171.66
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000411.67.fna -queryname NZ_ATMK010000411.67
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000411.67.fna -queryname NZ_ATMK010000411.67
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000411.67.fna -queryname NZ_ATMK010000411.67
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000261.68.fna -queryname NZ_ATMK010000261.68
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000261.68.fna -queryname NZ_ATMK010000261.68
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000261.68.fna -queryname NZ_ATMK010000261.68
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000061.6.fna -queryname NZ_JAEZ010000061.6
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000061.6.fna -queryname NZ_JAEZ010000061.6
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000061.6.fna -queryname NZ_JAEZ010000061.6
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000341.69.fna -queryname NZ_ATMK010000341.69
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000341.69.fna -queryname NZ_ATMK010000341.69
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000341.69.fna -queryname NZ_ATMK010000341.69
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000251.70.fna -queryname NZ_ATMK010000251.70
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000251.70.fna -queryname NZ_ATMK010000251.70
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000251.70.fna -queryname NZ_ATMK010000251.70
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000381.71.fna -queryname NZ_ATMK010000381.71
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000381.71.fna -queryname NZ_ATMK010000381.71
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000381.71.fna -queryname NZ_ATMK010000381.71
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000451.72.fna -queryname NZ_ATMK010000451.72
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000451.72.fna -queryname NZ_ATMK010000451.72
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000451.72.fna -queryname NZ_ATMK010000451.72
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000501.73.fna -queryname NZ_ATMK010000501.73
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000501.73.fna -queryname NZ_ATMK010000501.73
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000501.73.fna -queryname NZ_ATMK010000501.73
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000241.74.fna -queryname NZ_ATMK010000241.74
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000241.74.fna -queryname NZ_ATMK010000241.74
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_ATMK010000241.74.fna -queryname NZ_ATMK010000241.74
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000421.75.fna -queryname NZ_LBGT010000421.75
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000421.75.fna -queryname NZ_LBGT010000421.75
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000421.75.fna -queryname NZ_LBGT010000421.75
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000581.76.fna -queryname NZ_LBGT010000581.76
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000581.76.fna -queryname NZ_LBGT010000581.76
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000581.76.fna -queryname NZ_LBGT010000581.76
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000691.77.fna -queryname NZ_LBGT010000691.77
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000691.77.fna -queryname NZ_LBGT010000691.77
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000691.77.fna -queryname NZ_LBGT010000691.77
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000461.78.fna -queryname NZ_LBGT010000461.78
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000461.78.fna -queryname NZ_LBGT010000461.78
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000461.78.fna -queryname NZ_LBGT010000461.78
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125911.7.fna -queryname NZ_KI9125911.7
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125911.7.fna -queryname NZ_KI9125911.7
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KI9125911.7.fna -queryname NZ_KI9125911.7
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832651.79.fna -queryname NZ_KQ9832651.79
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832651.79.fna -queryname NZ_KQ9832651.79
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832651.79.fna -queryname NZ_KQ9832651.79
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000391.80.fna -queryname NZ_LBGT010000391.80
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000391.80.fna -queryname NZ_LBGT010000391.80
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000391.80.fna -queryname NZ_LBGT010000391.80
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000401.81.fna -queryname NZ_LBGT010000401.81
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000401.81.fna -queryname NZ_LBGT010000401.81
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000401.81.fna -queryname NZ_LBGT010000401.81
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832641.82.fna -queryname NZ_KQ9832641.82
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832641.82.fna -queryname NZ_KQ9832641.82
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832641.82.fna -queryname NZ_KQ9832641.82
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.fna -queryname NZ_LBGT010000141.83
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.fna -queryname NZ_LBGT010000141.83
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.fna -queryname NZ_LBGT010000141.83
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.AOI.fna -queryname NZ_LBGT010000141.83
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000141.83.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -queryname NZ_LBGT010000141.83
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -table NZ_LBGT010000141.83.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000531.84.fna -queryname NZ_LBGT010000531.84
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000531.84.fna -queryname NZ_LBGT010000531.84
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000531.84.fna -queryname NZ_LBGT010000531.84
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000591.85.fna -queryname NZ_LBGT010000591.85
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000591.85.fna -queryname NZ_LBGT010000591.85
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000591.85.fna -queryname NZ_LBGT010000591.85
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000471.86.fna -queryname NZ_LBGT010000471.86
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000471.86.fna -queryname NZ_LBGT010000471.86
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000471.86.fna -queryname NZ_LBGT010000471.86
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832671.87.fna -queryname NZ_KQ9832671.87
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832671.87.fna -queryname NZ_KQ9832671.87
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832671.87.fna -queryname NZ_KQ9832671.87
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000081.88.fna -queryname NZ_LBGT010000081.88
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000081.88.fna -queryname NZ_LBGT010000081.88
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000081.88.fna -queryname NZ_LBGT010000081.88
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000241.8.fna -queryname NZ_JAEZ010000241.8
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000241.8.fna -queryname NZ_JAEZ010000241.8
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_JAEZ010000241.8.fna -queryname NZ_JAEZ010000241.8
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000291.89.fna -queryname NZ_LBGT010000291.89
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000291.89.fna -queryname NZ_LBGT010000291.89
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000291.89.fna -queryname NZ_LBGT010000291.89
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000241.90.fna -queryname NZ_LBGT010000241.90
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000241.90.fna -queryname NZ_LBGT010000241.90
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000241.90.fna -queryname NZ_LBGT010000241.90
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000271.91.fna -queryname NZ_LBGT010000271.91
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000271.91.fna -queryname NZ_LBGT010000271.91
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000271.91.fna -queryname NZ_LBGT010000271.91
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832661.92.fna -queryname NZ_KQ9832661.92
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832661.92.fna -queryname NZ_KQ9832661.92
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832661.92.fna -queryname NZ_KQ9832661.92
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000661.93.fna -queryname NZ_LBGT010000661.93
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000661.93.fna -queryname NZ_LBGT010000661.93
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000661.93.fna -queryname NZ_LBGT010000661.93
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000681.94.fna -queryname NZ_LBGT010000681.94
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000681.94.fna -queryname NZ_LBGT010000681.94
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000681.94.fna -queryname NZ_LBGT010000681.94
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000451.95.fna -queryname NZ_LBGT010000451.95
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000451.95.fna -queryname NZ_LBGT010000451.95
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000451.95.fna -queryname NZ_LBGT010000451.95
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000281.96.fna -queryname NZ_LBGT010000281.96
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000281.96.fna -queryname NZ_LBGT010000281.96
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000281.96.fna -queryname NZ_LBGT010000281.96
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832601.97.fna -queryname NZ_KQ9832601.97
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832601.97.fna -queryname NZ_KQ9832601.97
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_KQ9832601.97.fna -queryname NZ_KQ9832601.97
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000251.98.fna -queryname NZ_LBGT010000251.98
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000251.98.fna -queryname NZ_LBGT010000251.98
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result/NZ_LBGT010000251.98.fna -queryname NZ_LBGT010000251.98
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/PRevotella_intermedia.result