Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_SGAZ010000101.2508.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_SGAZ010000101.2508.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_SGAZ010000101.2508.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_SGAZ010000101.2508.AOI_01 Sequence length = 21125 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 104 188 313 207 123 -0.01 90 - 90 - - 9 - +3 219 234 455 234 219 -3.89 0 - - 0 - 99 - 0002 +1 691 721 882 189 159 0.55 94 94 - - - 5 - 0003 +2 1295 1298 1462 165 162 3.21 82 - 82 - - 17 - 0004 +1 1558 1597 1719 159 120 -3.07 27 27 - 16 - 55 - 0005 +3 1575 1593 1733 156 138 -0.85 37 - - 37 - 62 - +3 1740 1767 1958 216 189 0.89 0 - - 0 - 99 - 0006 +3 2415 2598 2732 315 132 0.12 98 - - 98 1 - - +1 2650 2653 2787 135 132 2.34 0 0 - - - - 99 0007 -2 3217 3205 3050 165 153 9.34 72 - - 0 - 72 27 +3 3054 3093 3305 249 210 2.01 0 - - 0 - - 99 0008 -3 3350 3332 2616 732 714 7.35 99 - - - - - 99 0009 -1 3465 3405 3268 195 135 5.35 18 81 - - 18 - - -1 3807 3765 3568 237 195 3.71 2 - - - 2 - 97 -2 3817 3784 3638 177 144 -0.63 0 - - - 44 0 55 0010 -3 3830 3818 3429 399 387 3.58 99 - - - - - 99 +2 3884 3914 4045 159 129 -5.52 0 0 0 - - - 99 +1 3895 3901 4050 153 147 -2.71 0 0 - - - - 99 +2 4055 4157 4318 261 159 -4.18 0 - 0 0 - - 99 +3 4059 4191 4349 288 156 2.37 0 0 - 0 - - 99 -1 4434 4425 4258 174 165 -0.49 0 0 - - 0 - 99 +1 4165 4402 4545 378 141 -2.80 0 0 - 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