Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_QPGS010000141.2451.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_QPGS010000141.2451.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_QPGS010000141.2451.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QPGS010000141.2451.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 227 224 75 150 147 -0.79 1 0 - 98 - - 1 +1 1 82 363 360 279 -4.78 0 0 - 99 - - - 0001 +3 3 12 437 432 423 0.98 99 - - 99 - - - -3 458 371 228 228 141 -3.49 0 - - 21 - 78 0 0002 -2 499 385 200 297 183 1.43 12 - - 87 - 12 - 0003 +1 364 394 558 192 162 -8.24 99 99 - - - - - 0004 -3 668 587 459 207 126 -4.46 99 - - - - - 99 0005 -1 675 669 529 144 138 -3.09 90 - 0 - 90 - 9 0006 +2 494 569 706 210 135 -9.17 99 - 99 - - - - 0007 +3 849 867 998 147 129 -5.91 12 - - 12 - 87 - +2 1355 1358 1486 129 126 -4.95 0 - 0 - 99 - - +3 1476 1557 1703 225 144 -8.15 0 - - 0 99 0 - -2 1849 1636 1493 354 141 -5.28 0 - - 1 98 0 0 -3 1871 1814 1692 177 120 -3.59 0 0 - - 98 0 0 +1 1567 1750 1887 318 135 -1.61 3 3 14 - 81 - - 0008 -1 1989 1827 1306 681 519 2.67 99 - - - 99 - - -1 2223 2142 1990 231 150 -9.12 0 - 4 - 0 95 - -3 2351 2300 2067 282 231 -8.72 0 - 0 - - 99 0 -1 2475 2403 2281 192 120 -3.90 0 - 72 - 0 27 - -1 2658 2643 2476 180 165 -6.06 0 - 89 - 0 10 0 -3 2795 2654 2376 417 276 -10.44 0 - 99 - - 0 0 0009 -2 2824 2773 1850 972 921 3.46 99 - 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