Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLT010000111.2150.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLT010000111.2150.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLT010000111.2150.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_NSLT010000111.2150.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 157 154 5 150 147 -3.27 1 - 98 0 - 1 - +3 3 12 293 288 279 -8.72 0 - 99 0 - - - 0001 +2 2 173 367 363 192 3.71 99 - 99 - 0 0 - -2 388 301 158 228 141 -1.97 0 - 99 - 0 0 - -1 429 336 130 297 204 0.15 0 - 99 - 0 - - 0002 +3 294 324 488 192 162 -5.93 99 - - 99 - - - 0003 -2 595 514 389 204 123 -5.14 99 - - - - 99 - 0004 -3 602 596 459 141 135 -1.77 99 0 - - - 0 99 0005 +1 424 463 633 207 168 -5.91 99 99 - - - - - 0006 +2 776 794 925 147 129 -3.50 36 - 36 - 63 - - 0007 -1 1080 1074 922 156 150 -4.63 99 - - - 99 - - 0008 +3 1146 1194 1379 231 183 -4.18 72 - - 72 - 27 - 0009 -2 1420 1339 1187 231 150 -4.63 16 - - 83 - 16 - +1 1348 1351 1479 129 126 -4.19 0 0 - - - - 99 +2 1469 1565 1696 225 129 -8.78 0 - 0 1 0 - 98 -1 1842 1629 1507 333 120 -4.49 0 - 0 - 0 0 98 -2 1864 1807 1685 177 120 -3.00 0 - - 3 0 0 95 +3 1560 1641 1880 318 237 -0.93 0 - - 0 - - 99 0010 -3 1982 1820 1299 681 519 2.40 99 - - - - - 99 -3 2216 2135 1983 231 150 -7.31 0 0 - - 99 - 0 -2 2344 2293 2060 282 231 -7.83 0 0 - - 99 0 - -3 2468 2396 2274 192 120 -0.52 0 98 - 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