Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLQ010000031.2052.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLQ010000031.2052.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLQ010000031.2052.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_NSLQ010000031.2052.AOI_01 Sequence length = 21122 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 205 202 53 150 147 -3.41 0 - 99 0 - 0 - +3 3 60 341 336 279 -9.57 0 - 99 0 - - - 0001 +2 2 221 415 411 192 3.48 96 - 96 - 3 0 - -2 436 349 206 228 141 -1.55 0 - 98 - 1 0 - -1 477 384 178 297 204 0.26 0 - 99 - 0 - - 0002 -2 652 646 437 213 207 -4.11 99 - - 0 - 99 - 0003 +3 342 546 683 339 135 -6.14 99 - - 99 - - - 0004 +1 826 844 975 147 129 -3.98 35 35 - - - - 64 0005 +1 1009 1024 1161 150 135 -6.64 99 99 - - - - - +3 1332 1335 1463 129 126 -3.97 0 - - 0 - 99 - +1 1453 1549 1680 225 129 -10.44 0 0 8 - - 91 0 -3 1826 1613 1491 333 120 -4.89 0 0 - - 0 99 0 -1 1848 1791 1669 177 120 -2.75 0 - 11 - 0 88 0 +2 1544 1625 1864 318 237 -1.21 0 - 0 - - 99 - 0006 -2 1966 1804 1283 681 519 2.41 99 - - - - 99 - -2 2200 2119 1967 231 150 -7.27 0 - - 0 - 0 99 -1 2328 2277 2044 282 231 -9.01 0 - - 0 0 - 99 -2 2452 2380 2258 192 120 -2.96 0 - - 99 - 0 0 -2 2635 2620 2453 180 165 -5.16 0 - - 98 0 0 1 -1 2772 2631 2353 417 276 -10.54 0 - - 99 0 - 0 0007 -3 2801 2750 1827 972 921 2.98 99 - - 0 - - 99 0008 +2 2732 2732 2866 132 132 -1.58 99 - 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