Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLM010000111.1738.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLM010000111.1738.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_NSLM010000111.1738.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_NSLM010000111.1738.AOI_01 Sequence length = 21122 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 479 404 276 201 126 -7.11 0 - - - 99 - 0 +1 334 343 483 147 138 4.37 1 1 - - 98 - 0 +2 551 602 775 222 171 -0.58 0 - 0 - 99 - - -3 815 785 624 189 159 -1.43 0 - - - 99 - 0 0001 -1 1011 996 124 885 870 5.58 99 - - - 99 - - 0002 +2 875 896 1051 174 153 -4.70 99 - 99 - - - - +2 1052 1061 1201 147 138 -0.52 0 - 0 - 99 - - +3 1125 1125 1280 153 153 -0.90 0 - - 0 99 - - +1 1147 1198 1410 261 210 2.12 0 0 - - 99 - - -3 2063 2036 1875 186 159 -0.61 0 - - - 99 - 0 0003 -1 2277 2262 1012 1263 1248 8.87 99 - - - 99 - - 0004 +1 2116 2125 2298 180 171 0.20 99 99 - - - - - 0005 +3 2541 2550 2672 129 120 -2.01 69 - - 69 24 6 - 0006 -1 2871 2745 2464 405 279 0.37 99 - - - 99 - - 0007 +2 2729 2771 2926 195 153 -0.73 99 - 99 - - - - +1 2905 2935 3135 228 198 3.78 0 0 - - 99 - - 0008 -1 3306 3300 2872 432 426 10.09 99 - - - 99 - - +3 3129 3243 3401 270 156 1.04 0 99 - 0 - - - 0009 -2 3652 3607 3461 189 144 2.24 37 61 - 1 - 37 - 0010 +1 3247 3286 3720 471 432 3.11 99 99 - - - - - +3 3699 3720 3851 150 129 -1.62 10 17 - 10 1 - 70 0011 -1 3867 3735 3604 261 129 -1.00 99 - 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98 - - 1 +2 8387 8417 8656 267 237 -7.60 0 - 0 99 - - 0 -3 8768 8396 8184 582 210 -0.62 0 - - 99 - - 0 -2 8890 8839 8705 183 132 -5.14 0 - 0 99 - 0 - 0032 +3 7683 7779 8900 1215 1119 3.71 99 - - 99 - - - +2 9290 9326 9649 357 321 -5.73 0 - 0 99 - - 0 -2 9796 9745 9395 399 348 -2.07 0 - - 99 - 0 0 0033 +3 8955 8964 9959 1002 993 3.74 99 - - 99 - - 0 0034 -3 9968 9524 8769 1197 753 0.71 99 - - - - - 99 -2 10024 9925 9797 225 126 -4.26 0 - 0 99 - 0 0 -2 10174 10162 10025 147 135 2.66 0 - - 99 0 0 0 -3 10223 10166 9996 225 168 -0.18 0 - - 99 - - 0 +1 10228 10228 10353 123 123 -7.84 0 0 - 99 - - 0 +2 10328 10382 10603 273 219 -5.75 0 - 0 99 - 0 - -2 10657 10483 10334 321 147 0.14 0 - 0 99 - 0 - -1 11085 11025 10867 216 156 -2.76 0 - - 99 0 - 0 0035 +3 9978 9978 11144 1164 1164 7.72 99 - - 99 - - - 0036 -3 11225 11222 10815 408 405 -0.32 99 - - - - - 99 -2 11506 11488 11342 162 144 -1.87 0 - - 99 - 0 - +2 11369 11396 11521 150 123 -9.14 0 - 0 99 - - - +1 11425 11467 11619 192 150 -6.19 0 0 - 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