Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2539891.1348.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2539891.1348.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2539891.1348.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KZ2539891.1348.AOI_01 Sequence length = 19778 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 203 125 3 198 120 -10.19 0 0 0 - 99 - 0 +1 1 169 633 630 462 2.28 0 0 - - 99 - - +1 634 640 1047 411 405 0.07 0 0 - - 99 - - +2 959 962 1114 153 150 1.06 0 - 0 - 99 - - +3 1122 1140 1262 138 120 2.08 0 - - 0 - - 99 +3 1263 1266 1427 162 159 -0.89 0 - - 0 - - 99 +3 1428 1446 1607 177 159 -1.66 0 - - 0 - - 99 +1 1468 1495 1623 153 126 -3.40 2 2 - - - - 97 0001 -1 1746 1731 1594 150 135 -0.63 97 - - - 97 - 2 0002 +1 1630 1642 1776 144 132 -1.58 94 94 - - - - 5 +1 1777 1780 1902 123 120 -11.16 0 0 41 - - 58 0 0003 -3 1934 1571 1134 798 435 4.71 99 - - - - - 99 +2 1682 1721 1975 291 252 2.21 1 - 1 - - 98 - +3 1833 1983 2132 297 147 -7.84 0 0 - 0 - 99 - +1 1963 2014 2172 207 156 -8.10 0 0 - - - 99 - -1 2232 2232 2107 123 123 -6.09 0 - 19 - 0 80 - +2 2096 2129 2254 156 123 5.05 1 - 1 - - 98 - +3 2358 2385 2546 186 159 -2.58 0 - 4 0 - 95 - +2 2306 2309 2566 258 255 2.68 0 - 0 - - 99 - -1 2874 2835 2692 180 141 -10.37 0 - 2 - 0 97 - +2 2567 2654 2971 402 315 2.00 0 - 0 - - 99 - 0004 -2 3001 2911 1694 1305 1215 4.50 99 - - - - 99 - 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