Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2484151.1281.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2484151.1281.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_KZ2484151.1281.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KZ2484151.1281.AOI_01 Sequence length = 19198 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 33 42 212 177 168 -6.13 99 - - 99 - - - +2 146 308 499 351 189 -1.32 0 - 0 - 99 - - +1 370 430 657 285 225 3.97 0 0 - - 99 - - +1 658 694 849 189 153 -5.88 0 0 0 - 99 - - 0002 -1 876 861 115 759 744 7.27 99 - - - 99 - - 0003 +2 662 863 1399 735 534 -1.22 99 - 99 - - - - -3 1601 1487 1338 261 147 -6.32 0 - - - - 99 0 0004 -2 1804 1786 866 936 918 4.20 99 - - - - 99 - +3 1542 1671 1850 306 177 -5.67 0 2 97 0 - - - 0005 +1 1669 1786 1911 240 123 -4.89 81 81 18 - - - - -3 1964 1946 1812 150 132 -7.52 0 - 99 - - - 0 -1 2058 2052 1912 144 138 -4.57 1 - 98 - 1 - - 0006 +2 1454 1919 2209 753 288 -2.88 99 - 99 - - - - +2 2213 2222 2389 174 165 -9.09 0 - 0 15 - - 84 0007 -3 2417 2387 2181 234 204 5.81 99 - - 0 - - 99 0008 +3 2124 2220 2423 297 201 1.45 99 - - 99 - - - +3 2790 2820 2948 156 126 -3.36 0 - 0 0 - 99 0 0009 -2 3109 3079 2342 765 735 9.20 99 - - - - 99 - 0010 +2 2405 2600 3121 714 519 -1.42 99 - 99 - - - - 0011 +3 2949 3003 3146 195 141 -3.52 99 - - 99 - - - +2 3152 3164 3298 144 132 -6.60 0 95 0 3 - - - +3 3147 3177 3308 159 129 -6.36 0 99 - 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