Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFI010000081.2785.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFI010000081.2785.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFI010000081.2785.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FUFI010000081.2785.AOI_01 Sequence length = 21125 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 305 278 102 201 174 -5.63 0 99 - - 0 - 0 -1 390 252 79 309 171 -5.45 0 99 - - 0 - - -3 656 434 306 348 126 -6.46 0 99 - - - - 0 0001 +1 1 4 756 753 750 5.80 99 99 - - - - - 0002 -1 801 801 556 243 243 -3.34 99 - - - 99 - - -3 998 989 825 171 162 -4.48 0 99 - - - - 0 -1 1062 1044 886 174 156 -2.69 1 98 - - 1 - - 0003 +1 829 913 1107 276 192 0.61 99 99 - - - - - -3 1364 1121 999 363 120 -7.47 1 - 98 - - - 1 0004 +2 1244 1256 1381 135 123 -0.24 15 - 15 - - 84 - 0005 -2 1429 1309 1136 291 171 -2.32 43 - - - - 43 56 0006 +1 1267 1348 1539 270 189 -4.25 99 99 - - - - - 0007 -3 1790 1739 1611 177 126 -0.15 99 - - - - - 99 0008 +3 1671 1749 1928 255 177 -5.77 99 - - 99 - - - 0009 -2 2014 1936 1772 240 162 -5.59 99 - - - - 99 - 0010 -3 2114 1997 1845 267 150 -5.67 32 - - - - 67 32 0011 +3 1941 1968 2141 198 171 -6.46 99 - - 99 - - - +2 2075 2237 2428 351 189 -1.60 0 - 0 - 99 - - 0012 +1 2299 2359 2586 285 225 4.57 68 68 - - 31 - - +1 2587 2623 2778 189 153 -4.61 0 0 37 - 62 - - 0013 -1 2805 2661 2044 759 615 2.11 99 - - - 99 - 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