Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFE010000771.3062.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFE010000771.3062.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_FUFE010000771.3062.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FUFE010000771.3062.AOI_01 Sequence length = 21125 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 306 279 103 201 174 -5.35 0 - 99 - 0 0 - -2 391 253 80 309 171 -4.89 0 - 99 - - 0 - -1 657 435 307 348 126 -6.02 0 - 99 - 0 - - 0001 +2 2 5 757 753 750 6.04 99 - 99 - - - - 0002 -2 802 802 557 243 243 -4.36 99 - - - - 99 - -1 999 990 826 171 162 -3.20 0 - 99 - 0 - - -2 1063 1045 887 174 156 -3.22 0 - 99 - - 0 - 0003 +2 830 914 1108 276 192 1.37 99 - 99 - - - - -1 1365 1122 1000 363 120 -8.47 1 - - 98 1 - - 0004 +3 1245 1257 1382 135 123 -0.20 70 - - 70 - - 29 0005 -3 1430 1310 1137 291 171 -1.97 64 - - - 35 - 64 0006 +2 1268 1349 1540 270 189 -4.90 99 - 99 - - - - 0007 -1 1791 1740 1612 177 126 -1.78 99 - - - 99 - - 0008 -2 1915 1909 1757 156 150 -3.80 43 56 - - - 43 - 0009 +1 1672 1750 1929 255 177 -4.57 99 99 - - - - - 0010 -1 2115 1998 1846 267 150 -4.03 99 - - - 99 - - 0011 +1 1942 1969 2142 198 171 -5.64 99 99 - - - - - +3 2076 2238 2429 351 189 -0.77 0 - - 0 - 99 - 0012 +2 2300 2360 2587 285 225 3.70 13 - 13 - - 86 - +2 2588 2624 2779 189 153 -4.53 0 - 0 1 - 98 - 0013 -2 2806 2791 2045 759 744 2.08 99 - - - - 99 - 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