Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246011.2403.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246011.2403.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246011.2403.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0246011.2403.AOI_01 Sequence length = 21122 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 160 154 17 141 135 -0.86 95 - - 0 4 95 - 0002 +3 3 21 179 174 156 -6.09 99 - - 99 - - - 0003 +3 333 351 482 147 129 -1.97 19 - - 19 - 80 - 0004 +1 451 505 636 183 129 -3.81 89 89 - - - 10 - +2 839 842 970 129 126 -1.36 0 - 0 - 99 - - +3 960 1056 1187 225 129 -8.18 0 4 - 0 95 0 - -2 1333 1120 998 333 120 -5.32 0 - - 0 98 0 0 -3 1355 1298 1176 177 120 -1.14 0 9 - - 89 0 0 +1 1051 1132 1371 318 237 0.60 0 0 - - 99 - - 0005 -1 1473 1311 790 681 519 2.21 99 - - - 99 - - -1 1707 1626 1474 231 150 -6.67 0 - 0 - 0 99 - -3 1835 1784 1551 282 231 -8.00 0 - 2 - - 97 0 -1 1959 1887 1765 192 120 -3.14 0 - 99 - 0 0 - -1 2142 2127 1960 180 165 -4.36 0 - 99 - 0 0 0 -3 2279 2138 1860 417 276 -9.57 0 - 99 - - 0 0 0006 -2 2308 2146 1334 972 810 2.11 98 - 1 - - 98 - 0007 +1 2239 2239 2373 132 132 -2.22 93 93 6 - - - - 0008 +2 1238 1658 2380 1140 720 0.90 99 - 99 - - - - +2 2381 2408 2539 156 129 -9.47 0 0 0 1 0 - 98 +1 2392 2398 2559 165 159 -4.28 0 0 - 0 0 - 99 +3 2268 2433 2576 306 141 -4.20 0 - - 0 0 - 99 -1 2655 2460 2302 351 156 -7.38 0 - 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