Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246001.2404.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246001.2404.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0246001.2404.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0246001.2404.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 88 217 396 306 177 -2.89 0 0 0 99 - - - 0001 +2 215 332 457 240 123 -4.35 98 - 98 1 - - - -1 510 492 358 150 132 -12.78 0 - - 99 0 - - 0002 -2 604 598 458 144 138 -2.62 85 - - 14 - 85 - 0003 +3 3 465 755 750 288 -4.21 99 - - 99 - - - -3 956 863 717 237 144 -8.83 0 99 - - - - 0 -3 1145 1136 957 186 177 -12.51 0 0 - - 99 - 0 -3 1346 1268 1146 198 120 -11.06 0 0 0 - 99 - 0 -3 1547 1469 1347 198 120 -14.23 0 0 0 - 99 0 0 0004 +1 670 706 1977 1305 1269 2.12 0 0 - - 99 - - +1 1978 1984 2391 411 405 -0.31 0 0 - - 99 - - +2 2303 2306 2452 147 144 2.88 4 - 4 - 95 - - 0005 -1 2457 2409 727 1728 1680 7.57 99 - - - 99 - - +2 2465 2483 2605 138 120 2.95 3 - 3 - - 96 - +2 2606 2609 2770 162 159 -1.23 0 - 0 - - 99 - -1 2865 2787 2665 198 120 -8.08 0 - - - 0 99 - +2 2771 2816 2950 177 132 -2.62 0 - 0 0 - 99 - +3 2811 2838 2966 153 126 -5.61 0 - - 0 - 99 - 0006 -3 3089 3074 2937 150 135 -0.36 99 - - - - 0 99 0007 +3 2973 2985 3119 144 132 -1.67 98 - - 98 - 1 - +3 3120 3123 3245 123 120 -12.48 0 6 - 0 93 0 - 0008 -2 3277 2914 2477 798 435 4.24 99 - 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