Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245991.2412.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245991.2412.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245991.2412.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245991.2412.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 214 211 62 150 147 -2.19 23 - 76 0 - 23 - +3 3 69 350 345 279 -9.75 0 - 99 0 - - - 0002 +2 2 230 424 420 192 3.03 97 - 97 - 2 0 - -2 445 358 215 228 141 -2.14 0 - 91 - 8 0 - -1 486 372 187 297 183 -1.14 0 - 99 - 0 - - 0003 +3 351 381 545 192 162 -7.65 99 - - 99 - - - 0004 -2 655 574 446 207 126 -6.15 99 - - - - 99 - 0005 -3 662 656 516 144 138 -2.10 95 0 - - - 4 95 0006 +1 481 556 693 210 135 -7.77 99 99 - - - - - 0007 +2 836 854 985 147 129 -5.26 35 - 35 - 64 - - +1 1342 1345 1473 129 126 -4.62 0 0 - - - - 99 +2 1463 1559 1690 225 129 -9.70 0 - 0 0 0 - 99 -1 1836 1623 1501 333 120 -4.84 0 - 0 - 0 0 99 -2 1858 1801 1679 177 120 -2.80 0 - - 5 0 0 93 +3 1554 1734 1874 318 138 -3.75 1 - - 1 - - 98 0008 -3 1976 1814 1293 681 519 2.65 99 - - - - - 99 -3 2210 2129 1977 231 150 -8.67 0 0 - - 99 - 0 -2 2338 2287 2054 282 231 -9.21 0 0 - - 99 0 - -3 2462 2390 2268 192 120 -3.07 0 93 - - 5 - 0 -3 2645 2630 2463 180 165 -5.19 0 99 - - 0 0 0 -2 2782 2641 2363 417 276 -10.97 0 99 - - 0 0 - 0009 -1 2811 2760 1837 972 921 2.80 99 0 - 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