Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245971.2410.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245971.2410.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245971.2410.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245971.2410.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 202 351 348 147 -1.99 0 0 97 - - 2 - 0001 +2 2 140 412 408 270 1.55 47 - 47 - - 52 - -3 545 503 213 330 288 -7.75 0 - - - - 99 0 +3 321 366 656 333 288 -3.33 0 - - 0 - 99 - +2 413 497 772 357 273 1.25 0 - 0 - - 99 - +1 1018 1024 1179 159 153 -1.29 0 0 - 0 0 - 99 0002 +3 876 888 1238 360 348 1.83 99 - - 99 - - - 0003 -3 1556 1496 945 609 549 6.95 99 - - - - - 99 -1 1626 1533 1303 321 228 -4.93 0 - - - 0 - 99 -3 1997 1778 1557 438 219 -5.02 0 - 0 - - 99 0 +2 1400 1700 2116 714 414 3.04 0 - 0 - - 99 - 0004 -2 2131 2095 1493 636 600 5.60 99 - 0 - - 99 - 0005 +3 2049 2205 2369 318 162 0.23 99 - - 99 - - - -3 2540 2522 2400 138 120 -1.01 0 - 99 - - - 0 -1 2790 2763 2596 192 165 -5.37 0 - 99 - 0 - - -2 2827 2797 2666 159 129 4.87 0 - 99 - - 0 - -2 3085 3067 2828 255 237 2.70 0 - 99 - - 0 - 0006 +2 2288 2291 3280 990 987 6.37 99 - 99 - - - - 0007 -3 3374 3314 3192 180 120 -2.37 99 - - - - - 99 -1 3753 3726 3586 165 138 2.16 9 90 - - 9 - - +2 3737 3746 3931 192 183 -0.23 0 99 0 - - - - -1 4131 4107 3754 375 351 1.62 0 99 - - 0 - - 0008 +2 3932 4085 4207 273 120 0.06 61 38 61 - - - - 0009 +1 3379 3391 4596 1215 1203 3.23 99 99 - - - - - 0010 -3 5060 5042 4467 591 573 1.77 99 - - - - - 99 -2 5212 5200 5045 165 153 -3.30 0 - - 99 - 0 - 0011 +3 4503 4560 5219 714 657 3.81 99 - - 99 - - - -3 5270 5216 5061 207 153 -0.01 0 - - 99 - 0 0 +2 5468 5546 5683 213 135 -2.46 0 - 0 - 99 - - 0012 +1 5653 5668 5817 162 147 2.47 15 15 - - 84 - - -3 6005 5969 5844 159 123 -2.80 0 0 - - 99 - 0 +1 5818 5848 6009 189 159 1.79 0 0 - - 99 - 0 +2 6224 6230 6397 171 165 -2.45 0 - 0 - 99 - - 0013 -1 6594 6504 5320 1272 1182 4.47 99 - - - 99 - - 0014 +1 6655 6697 6858 201 159 0.14 94 94 - 2 3 - - 0015 +3 6576 6606 6872 294 264 -1.55 99 - - 99 - - - 0016 +2 6719 6740 6937 216 195 -2.85 99 - 99 - - - - 0017 -3 7124 7109 6795 327 312 1.95 99 - - - - - 99 -2 7180 7090 6965 213 123 -2.89 3 29 - - - 3 66 -2 7390 7375 7235 153 138 -6.69 0 79 - - 20 0 - -1 7536 7518 7174 360 342 2.74 4 95 - - 4 - - -3 7649 7493 7329 318 162 0.50 3 72 - - 24 - 3 0018 +1 6859 7108 7764 903 654 2.69 99 99 - 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0 +2 19961 19970 20149 186 177 -6.36 0 99 0 - 0 - - 0048 -1 20196 20157 19129 1065 1026 0.02 0 99 - - 0 - - 0049 +1 18625 18625 20211 1584 1584 6.66 99 99 - - - - - 0050 +2 20150 20162 20380 228 216 5.84 99 - 99 - - 0 - +3 20181 20244 20390 207 144 -4.80 0 - - 0 - 99 - 0051 -2 20437 20341 20126 309 213 -4.31 99 - - - - 99 - 0052 +1 20503 20509 20649 144 138 1.79 87 87 - - - - 12 +2 20597 20615 20749 150 132 -6.51 0 - 0 - - - 99 0053 -1 20892 20775 20650 240 123 -3.44 91 - - - 91 - 8 -2 21019 20890 20711 306 177 -5.30 0 - - - 0 0 99 0054 -3 21107 20957 20352 753 603 -0.07 99 - - - - - 99