Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245961.2402.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245961.2402.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245961.2402.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245961.2402.AOI_01 Sequence length = 21125 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 221 218 69 150 147 -1.55 5 0 - 94 - - 5 +1 1 76 357 354 279 -9.73 0 0 - 99 - - - 0001 +3 3 237 431 426 192 2.77 31 - - 31 - 68 0 -3 452 365 222 228 141 -2.32 0 - - 63 - 36 0 -2 493 400 194 297 204 2.19 7 - - 92 - 7 - 0002 +1 358 388 552 192 162 -7.83 99 99 - - - - - 0003 -3 662 581 453 207 126 -3.92 99 - - - - - 99 0004 -1 669 663 523 144 138 -2.23 96 - 0 - 96 - 3 0005 +2 488 563 700 210 135 -7.33 99 - 99 - - - - 0006 +3 843 861 992 147 129 -5.23 34 - - 34 - 65 - 0007 +3 1026 1041 1178 150 135 -5.90 99 - - 99 - - - +2 1349 1352 1480 129 126 -5.18 0 - 0 - 99 - - +3 1470 1557 1697 225 138 -7.26 0 28 - 0 71 0 - -2 1843 1630 1508 333 120 -6.01 0 - - 2 97 0 0 -3 1865 1808 1686 177 120 -4.38 0 0 - - 99 0 0 +1 1561 1642 1881 318 237 -0.81 0 0 - - 99 - - 0008 -1 1983 1821 1300 681 519 2.56 99 - - - 99 - - -1 2217 2136 1984 231 150 -8.09 0 - 1 - 0 98 - -3 2345 2294 2061 282 231 -8.32 0 - 0 - - 99 0 -1 2469 2397 2275 192 120 -1.42 0 - 93 - 0 6 - -1 2652 2637 2470 180 165 -5.04 0 - 98 - 0 1 0 -3 2789 2648 2370 417 276 -10.75 0 - 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