Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245941.2408.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245941.2408.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245941.2408.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245941.2408.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -3 164 158 18 144 138 -1.65 99 0 - - - 0 99 0002 +1 1 58 195 192 135 -7.08 99 99 - - - - - 0003 +2 338 356 487 147 129 -5.05 51 - 51 - 48 - - +1 844 847 975 129 126 -4.41 0 0 - - - - 99 +2 965 1046 1192 225 144 -8.07 0 - 0 - 0 - 99 -1 1338 1125 982 354 141 -6.06 0 - 0 - 0 0 99 -2 1360 1303 1181 177 120 -1.96 1 - - 2 0 1 96 +3 1056 1236 1376 318 138 -3.40 1 - - 1 - - 98 0004 -3 1478 1316 795 681 519 2.76 99 - - - - - 99 -3 1712 1631 1479 231 150 -8.07 0 6 - - 93 - 0 -2 1840 1789 1556 282 231 -9.01 0 0 - - 99 0 - -3 1964 1892 1770 192 120 -4.53 0 89 - - 9 - 0 -3 2147 2132 1965 180 165 -3.94 0 99 - - 0 0 0 -2 2284 2143 1865 417 276 -11.15 0 99 - - 0 0 - 0005 -1 2313 2262 1339 972 921 2.40 99 0 - - 99 - - 0006 +3 2244 2244 2378 132 132 -2.32 99 0 - 99 - - - 0007 +1 1243 1663 2385 1140 720 0.43 99 99 - - - - - +1 2386 2413 2544 156 129 -9.71 0 0 0 0 - 99 0 +3 2397 2403 2564 165 159 -4.37 0 - 0 0 - 99 0 +2 2273 2438 2581 306 141 -4.70 0 - 0 - - 99 0 -3 2660 2465 2307 351 156 -8.76 0 - 0 - - 99 0 0008 +3 2703 2715 2843 138 126 -4.31 92 - 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