Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245921.2406.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245921.2406.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245921.2406.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245921.2406.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 89 218 397 306 177 -5.48 0 98 0 1 - - - 0001 +3 216 333 458 240 123 -4.54 97 2 - 97 - - - -2 511 493 359 150 132 -8.95 0 99 - - - 0 - 0002 -3 605 599 459 144 138 -0.31 80 19 - - - - 80 0003 +1 1 466 756 753 288 -2.96 99 99 - - - - - -1 957 945 718 237 225 -5.96 0 - 99 - 0 - - -1 1146 1137 958 186 177 -12.35 0 - 0 - 0 99 - +3 1143 1143 1277 132 132 -2.87 0 - 0 0 - 99 - -1 1347 1269 1147 198 120 -10.52 0 - 0 0 0 99 - -1 1548 1470 1348 198 120 -11.05 0 - 0 0 0 99 0 0004 +2 671 707 1978 1305 1269 -0.72 0 - 0 - - 99 - +2 1979 2204 2392 411 186 -4.22 0 - 0 - - 99 - +3 2304 2307 2459 153 150 1.07 0 - - 0 - 99 - 0005 -2 2482 2482 728 1752 1752 6.56 99 - - - - 99 - 0006 +1 2467 2476 2607 138 129 0.84 99 99 - - - - - +1 2608 2611 2772 162 159 -0.44 0 0 - - 99 - - +1 2773 2818 2952 177 132 -2.63 0 0 0 - 99 - - 0007 +2 2813 2840 2968 153 126 -0.63 53 - 53 - 46 - - 0008 -2 3091 3076 2939 150 135 -2.84 96 - - - 3 96 - 0009 +2 2975 2987 3121 144 132 -1.67 99 - 99 - 0 - - +2 3122 3125 3247 123 120 -9.81 0 - 0 7 0 - 92 0010 -1 3279 2916 2479 798 435 3.39 99 - 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