Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245911.2405.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245911.2405.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/NZ_CP0245911.2405.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_gingivalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0245911.2405.AOI_01 Sequence length = 21113 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 97 226 405 306 177 -2.79 0 0 0 98 - - - 0001 +2 224 341 466 240 123 -3.84 97 - 97 2 - - - -1 519 501 367 150 132 -12.38 0 - - 99 0 - - 0002 -2 613 607 467 144 138 -2.45 78 - - 21 - 78 - 0003 +3 3 474 764 759 288 -3.44 99 - - 99 - - - -3 965 872 726 237 144 -8.63 0 99 - - - - 0 -3 1154 1145 966 186 177 -11.14 0 0 - - 99 - 0 +2 1151 1151 1285 132 132 -1.44 0 0 0 - 99 - - -3 1355 1277 1155 198 120 -11.62 0 0 0 - 99 - 0 -3 1556 1478 1356 198 120 -11.62 0 0 0 - 99 - 0 0004 +1 679 718 1986 1305 1266 2.36 0 0 - - 99 - - +1 1987 1993 2400 411 405 -0.64 0 0 - - 99 - - +2 2312 2315 2467 153 150 -0.17 0 - 0 - 99 - - 0005 -1 2490 2490 736 1752 1752 6.69 99 - - - 99 - - +3 2475 2493 2615 138 120 3.37 1 - - 1 - - 98 +3 2616 2619 2780 162 159 0.24 0 - - 0 - - 99 +3 2781 2826 2960 177 132 -2.22 0 0 - 0 - - 99 +1 2821 2848 2976 153 126 -5.13 0 0 - - - - 99 0006 -1 3099 3084 2947 150 135 -0.27 99 - - - 99 - 0 0007 +1 2983 2995 3129 144 132 -2.33 98 98 - - - - 1 +1 3130 3133 3255 123 120 -12.07 0 0 27 - - 72 0 0008 -3 3287 2924 2487 798 435 5.02 99 - 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