Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_canoris.result/NZ_JQZX010000061.6.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_canoris.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_canoris.result/NZ_JQZX010000061.6.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_canoris.result/NZ_JQZX010000061.6.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Porphyromonadaceae/Porphyromonas_canoris.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JQZX010000061.6.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 142 330 327 186 1.70 0 0 - - 99 - - +2 314 314 478 162 162 -2.80 0 - 0 - 99 - - -2 796 787 659 135 126 -4.06 0 - - 99 - 0 - +3 837 873 1001 162 126 -0.01 0 - - 0 - 0 99 0001 -2 1015 919 797 216 120 3.07 99 - - - - 99 - 0002 -3 1355 1343 849 504 492 11.28 99 - - - - - 99 0003 +1 1273 1300 1482 207 180 -5.16 99 99 - - - - - 0004 -1 1692 1617 1393 297 222 4.02 99 - - - 99 - - +3 1704 1713 1871 165 156 -1.68 0 - 0 0 - 99 - +2 1637 1700 1918 279 216 2.94 0 - 0 - - 99 - 0005 -2 2071 2050 1664 405 384 6.54 99 - - - - 99 - 0006 +2 2024 2090 2326 300 234 -3.11 99 - 99 - - - - +3 2151 2259 2573 420 312 2.79 0 - - 0 - 99 - -1 2619 2598 2467 150 129 -1.37 0 - 0 - 0 99 - 0007 -2 2668 2644 2171 495 471 10.43 99 - - - - 99 - 0008 +2 2615 2627 2749 132 120 -2.72 99 - 99 - - - - 0009 +1 2653 2659 2796 141 135 4.18 99 99 - - - - - -3 2942 2861 2715 225 144 -3.36 0 - - - 99 - 0 -2 2947 2878 2735 210 141 -3.28 0 - - 0 99 0 0 +2 2891 2924 3073 180 147 2.14 6 - 6 - 93 - - -3 3242 3233 3066 174 165 -6.66 0 0 - - 99 0 0 +1 2938 3037 3261 321 222 -2.53 0 0 - 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