/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.fna -queryname NC_0147341.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.fna -queryname NC_0147341.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.fna -queryname NC_0147341.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.AOI.fna -queryname NC_0147341.0
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NC_0147341.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -queryname NC_0147341.0
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -table NC_0147341.0.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.fna -queryname NZ_BDCR010000011.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.fna -queryname NZ_BDCR010000011.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.fna -queryname NZ_BDCR010000011.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.AOI.fna -queryname NZ_BDCR010000011.1
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000011.1.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -queryname NZ_BDCR010000011.1
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -table NZ_BDCR010000011.1.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000021.2.fna -queryname NZ_BDCR010000021.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000021.2.fna -queryname NZ_BDCR010000021.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000021.2.fna -queryname NZ_BDCR010000021.2
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000041.3.fna -queryname NZ_BDCR010000041.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000041.3.fna -queryname NZ_BDCR010000041.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000041.3.fna -queryname NZ_BDCR010000041.3
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000031.4.fna -queryname NZ_BDCR010000031.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000031.4.fna -queryname NZ_BDCR010000031.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result/NZ_BDCR010000031.4.fna -queryname NZ_BDCR010000031.4
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Paludibacteraceae//Paludibacteraceae.result