Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Dysgonomonadaceae//Dysgonomonadaceae.result/NZ_OEPV010000061.301.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Dysgonomonadaceae//Dysgonomonadaceae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Dysgonomonadaceae//Dysgonomonadaceae.result/NZ_OEPV010000061.301.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Dysgonomonadaceae//Dysgonomonadaceae.result/NZ_OEPV010000061.301.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Dysgonomonadaceae//Dysgonomonadaceae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_OEPV010000061.301.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 35 160 156 123 3.71 0 - 0 - 99 - - -2 307 283 149 156 132 -2.90 0 - - - 99 0 - +2 161 179 358 195 177 5.27 0 - 0 - 99 - - -3 755 749 597 156 150 0.17 0 - 99 - 0 - 0 -3 1019 1019 882 135 135 -4.77 0 - 99 - - - 0 -2 1249 1054 929 318 123 -1.10 0 - 99 - - 0 - -1 1341 1290 1168 171 120 -3.19 0 - 99 - 0 - - 0001 +2 428 467 1378 948 909 11.21 99 - 99 - - - - -1 1503 1497 1375 126 120 -5.42 0 - - - 0 99 - 0002 -2 1516 1513 1322 192 189 -1.80 99 - - - - 99 - 0003 +2 1388 1391 1585 195 192 6.39 99 - 99 - - - - 0004 -2 1759 1741 1592 165 147 0.16 99 - - - - 99 - -3 1832 1790 1629 201 159 0.69 0 99 - - - - 0 0005 -3 2057 2057 1935 120 120 3.28 29 70 - - - - 29 -3 2222 2180 2058 162 120 0.05 2 71 - 26 - - 2 +2 2618 2651 2776 156 123 -1.97 0 99 0 - 0 - - -1 2826 2664 2527 297 135 -3.89 0 99 - - 0 - - -2 2848 2812 2672 174 138 -8.74 0 99 - - 0 0 - -1 2976 2976 2827 147 147 -0.89 0 99 - - 0 - - -3 3293 3278 3147 144 129 -2.80 0 99 - - 0 - 0 -1 3606 3345 3088 516 255 -2.57 0 99 - - 0 - - -2 3673 3661 3509 162 150 -1.72 1 98 - - - 1 - +3 3582 3588 3719 135 129 -11.82 0 99 0 0 - - - +2 3572 3596 3727 153 129 -2.59 0 99 0 - - - - 0006 +1 1621 1672 3903 2280 2229 6.45 99 99 - - - - - 0007 -1 3936 3924 3793 141 129 -0.30 99 - - - 99 - - -2 4267 4174 3959 306 213 3.66 0 - - 99 - 0 - -3 4346 4310 4185 159 123 -2.07 0 - - 99 - - 0 -3 4508 4490 4347 159 141 1.89 0 - - 99 - - 0 -3 4670 4670 4509 159 159 -6.62 0 - - 99 - - 0 0008 +3 3900 3933 4730 828 795 10.18 99 - - 99 - - - 0009 +2 4640 4643 4783 141 138 3.91 99 - 99 - - - - 0010 -3 4850 4847 4674 174 171 0.57 99 - - - - - 99 +2 4907 4934 5056 147 120 -4.36 0 - 0 - - 99 - +3 4983 5076 5210 225 132 -2.49 0 - - 0 - 99 - +2 5276 5321 5527 249 204 -2.28 0 - 0 - - 99 - -1 5709 5664 5524 183 138 -4.05 0 - - - 0 99 - +3 5838 5838 5981 141 141 -3.52 0 - - 0 - 99 0 -3 6020 5756 5628 390 126 -8.49 0 - - - - 99 0 +2 6263 6263 6415 150 150 -5.39 0 - 0 - - 99 - +3 6546 6621 6761 213 138 1.04 0 - - 0 - 99 - +2 7121 7142 7273 150 129 2.12 0 0 0 - - 99 0 0011 -2 7315 7306 4871 2442 2433 10.13 99 - - - - 99 - +1 7450 7462 7593 141 129 2.65 0 0 - 0 - - 99 0012 -3 7967 7952 7320 645 630 11.81 99 - - - - - 99 0013 +1 7723 7828 7974 249 144 2.88 99 99 - - - - - +2 8846 8879 9007 159 126 1.24 0 - 0 - - 99 - +3 8934 8952 9167 231 213 0.36 0 - - 0 - 99 - +2 9065 9101 9244 177 141 -4.73 0 - 0 - - 99 - +3 9201 9267 9392 189 123 -1.97 0 - - 0 - 99 - 0014 -2 9886 9868 8015 1869 1851 11.91 99 - - - - 99 - 0015 +3 9723 9741 9902 177 159 4.40 99 - - 99 - - - +3 10179 10230 10358 177 126 4.09 0 - - 0 - - 99 +1 10267 10315 10440 171 123 -6.66 0 0 - - - - 99 -2 10636 10636 10505 129 129 -4.64 0 - - - - 0 99 +1 10975 11032 11157 180 123 0.53 0 0 - - - - 99 0016 -3 11192 11192 9987 1203 1203 12.31 99 - - - - - 99 +2 11909 11930 12064 153 132 -2.82 0 0 0 - 99 - - +1 11833 11893 12087 252 192 3.80 0 0 - - 99 - - 0017 -1 12159 12144 11161 996 981 14.06 99 - - - 99 - - 0018 +2 12065 12074 12205 138 129 0.33 99 - 99 - - - - 0019 -2 12211 12202 12080 129 120 3.74 90 - 1 8 - 90 - 0020 +3 12084 12102 12242 156 138 0.38 99 - - 99 - - - +1 12211 12214 12384 171 168 -1.39 0 0 - - - - 99 +1 12508 12523 12663 153 138 -2.65 0 0 0 - - - 99 +1 12673 12727 12852 177 123 -3.43 0 0 - - - - 99 +3 13029 13119 13250 219 129 2.01 0 - - 0 - - 99 0021 -3 13289 13247 12153 1134 1092 10.63 99 - - - - - 99 +2 13472 13493 13615 141 120 -6.35 0 - 0 - - 99 - 0022 -2 13882 13879 13247 633 630 12.53 99 - - - - 99 - 0023 +3 13713 13782 13907 192 123 3.64 99 - - 99 - - - 0024 -1 13995 13974 13852 141 120 8.21 99 - - - 99 - - 0025 +2 13958 13964 14119 159 153 8.67 99 - 99 - - - - 0026 -3 14543 14537 14073 468 462 15.72 99 - - - - - 99 0027 +2 14471 14471 14644 171 171 8.88 99 - 99 - - - - 0028 +1 14638 14641 14763 123 120 3.50 99 99 - - - - - +3 14808 14925 15074 264 147 -1.76 0 - - 0 - - 99 +1 15055 15124 15279 222 153 2.24 0 0 - - - - 99 0029 -3 15689 15683 14664 1023 1017 16.26 99 - - - - - 99 -2 15934 15880 15749 183 129 -6.65 0 - - - 99 0 - +2 15974 16007 16135 159 126 -0.02 0 - 0 - 99 - - +2 16136 16154 16300 162 144 4.53 0 - 0 - 99 - - 0030 -1 16374 16314 15730 642 582 15.27 99 - - - 99 - - 0031 -1 16800 16572 16375 423 195 -0.92 99 - - - 99 - - -2 17110 17092 16955 153 135 -1.29 0 99 - - 0 0 - 0032 +1 16471 16579 17166 693 585 8.08 99 99 - - - - - 0033 -2 17599 17569 17420 177 147 0.89 99 - - - - 99 - -1 17772 17643 17497 273 144 3.76 0 99 - - 0 - - -1 17916 17910 17788 126 120 1.21 0 99 - - 0 - - 0034 +1 17452 17464 18054 600 588 16.68 99 99 - - - - - +3 18240 18312 18611 369 297 1.14 0 - - 0 - 99 - +2 18725 18776 19012 285 234 -3.09 0 - 0 - - 99 - -1 19083 19056 18910 171 144 -2.77 0 - - - 0 99 - +3 18969 18984 19133 162 147 3.95 0 - - 0 - 99 - -1 19302 19257 19096 204 159 1.03 0 - - - 0 99 - 0035 -2 19315 19306 18110 1203 1194 12.41 99 - - - - 99 - 0036 -1 19713 19668 19543 168 123 3.51 99 - - - 99 - - -3 20102 20069 19917 183 150 -1.37 0 - 99 - - - 0 +3 20037 20055 20195 156 138 -0.09 0 - 99 0 - - - 0037 +2 19589 19589 20557 966 966 10.66 99 - 99 - - - - 0038 -1 21138 21057 20569 567 486 8.60 99 - - - 99 - -