{
"AOIs": [
{
"name": "NZ_WDES010001281.1330.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_xylanisolvens/GCF_000178215.1_ASM17821v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00002",
"orfname": "orf00002",
"gene_start": 347,
"gene_end": 517,
"gene_strand": "+",
"real_start": 2866,
"real_end": 3036 ,
"real_strand": "-",
"name": "orf00002",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 12.7697310079811,
"motifs": "",
"function": "",
"annotation":"",
"protein":"LIFFSTEPLFPSIQRRTMEPLPLSPFSTCNLFAKKKITIYPQYYCYITIGINSHHL",
"dna":"TTGATCTTTTTTTCTACTGAACCGCTATTTCCATCAATTCAGAGGAGGACGATGGAACCCCTTCCCCTCTCCCCCTTTAGCACCTGTAATTTATTCGCCAAAAAGAAAATAACTATCTATCCGCAATACTATTGTTACATTACAATCGGGATTAACAGCCATCATTTA",
"points": [{"x":10.2571681939107,"y":0},{"x":10.2571681939107,"y":2},{"x":14.8822938220514,"y":2},{"x":15.2822938220514,"y":1},{"x":14.8822938220514,"y":0}]}
,{
"name": "orf00003",
"orfname": "orf00003",
"gene_start": 543,
"gene_end": 986,
"gene_strand": "+",
"real_start": 2397,
"real_end": 2840 ,
"real_strand": "-",
"name": "orf00003",
"color": "#8fbcb9",
"yline": 10,
"angle": -60,
"xtext": 22.5982855453739,
"motifs": "",
"function": "pesticin immunity protein ",
"annotation":"Species=| |
match=58.394%|Evalue=4.13e-52
UniRef:CAA90861.1",
"protein":"MKPIQLIYSILIYLFIHLGASASDKIYSAKEILLNLEVGSFHNSLSEGVPGEYKNHKTFKETEFTHGEYDKNKYFSLTNNDKSWMISLKIIGIKNDEYTVCFGDFSIIRPPTYVAVNPLILKKTKPGNFRVVKEIKKSIPGCAIYHH",
"dna":"ATGAAGCCAATACAATTAATATATTCAATACTAATCTATTTATTTATCCATCTTGGTGCTTCGGCATCCGACAAAATATATTCAGCAAAAGAAATATTACTGAACCTTGAAGTAGGTAGTTTTCATAATTCGCTATCAGAGGGAGTCCCGGGAGAGTACAAAAACCACAAAACATTTAAAGAGACCGAGTTCACTCACGGTGAATATGATAAAAACAAGTATTTTTCACTTACGAATAATGATAAGTCATGGATGATTTCATTAAAGATAATCGGAATAAAAAACGATGAATACACTGTCTGTTTCGGCGACTTCTCCATCATTAGACCACCAACATATGTAGCCGTAAATCCGCTGATTTTAAAAAAAACGAAGCCCGGTAATTTCAGAGTAGTAAAAGAAATAAAAAAATCAATCCCTGGCTGTGCAATATATCATCAT",
"points": [{"x":16.0508424475318,"y":0},{"x":16.0508424475318,"y":2},{"x":28.7457286432161,"y":2},{"x":29.1457286432161,"y":1},{"x":28.7457286432161,"y":0}]}
,{
"name": "85.3;pesticin",
"orfname": "orf00007",
"gene_start": 1027,
"gene_end": 2034,
"gene_strand": "-",
"real_start": 1349,
"real_end": 2356 ,
"real_strand": "+",
"name": "85.3;pesticin",
"color": "#70c947",
"yline": 10,
"angle": -60,
"xtext": 45.2409104345256,
"motifs": "",
"function": "85.3;pesticin",
"annotation":"Evalue=5.68e-165 match=94.421%;",
"protein":"LSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEFSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENENILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPDAPYFDSTGVTFGSGVDLGQRSKQDLLNDGVPQSIADKLDGYYMLRGQGAYDKVKSNPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSVGYQKGYYLPKTASDVWDALVAKDWNGLVTAFNDFGGSTSERRKREGALVQQDIDSGLLK",
"dna":"TTGAGTAGTTACAGGCCAAATTTTGAAGCCAATTCAATTACAATTGCATTGCCTCATTATGTGGATCTTCCTGGTCGCAGTAATTTCAAACTGATGTATATCATGGGGTTTCCGATTGATACGGAGATGGAAAAGGACAGTGAATTTTCAAATAAGATCCGTCAGGAAAGTAAAATTTCAAAAACTGAAGGGACTGTATCTTACGAACAGAAAATAACTGTTGAAACAGGTCAGGAAAAAGACGGTGTAAAAGTTTACCGTGTTATGGTTCTTGAAGGAACAATTGCAGAATCTATTGAACATCTCGATAAGAAAGAGAATGAAAACATTCTGAATAATAACCGAAATCGCATCGTCCTAGCGGACAACACTGTCATTAACTTTGACAATATTAGTCAACTGAAGGAATTTTTACGTCGTTCGGTAAATATTGTTGACCACGATATTTTCTCCAGTAATGGTTTTGAAGGGTTTAATCCGACAAGTCATTTTCCGTCCAATCCTGACGCGCCATATTTTGACTCTACAGGTGTAACATTCGGCTCAGGTGTTGACCTTGGTCAGCGAAGTAAACAGGACTTGTTGAATGATGGCGTGCCTCAGAGTATTGCAGATAAACTTGACGGATATTATATGCTTCGTGGACAGGGTGCATATGATAAAGTAAAATCAAATCCGCTGACACTTTCCGATAATGAAGCTCATCTCTTATCTAATATTTATATTGATAAATTCTCACATAAGATTGAAGGGCTTTTCAATGATGCTAATATCGGTCTTCGATTCAGTGATCTTCCTTTGAGAACCCGTACAGCACTGGTGTCTGTTGGTTATCAGAAAGGGTACTATTTACCAAAAACGGCTTCTGATGTATGGGATGCATTGGTTGCAAAAGACTGGAATGGACTTGTTACTGCATTTAATGATTTTGGTGGAAGTACATCGGAACGACGAAAAAGAGAAGGGGCCCTTGTTCAACAGGATATTGATTCAGGATTATTGAAA",
"points": [{"x":30.3576707064735,"y":1},{"x":30.7576707064735,"y":2},{"x":60.1241501625776,"y":2},{"x":60.1241501625776,"y":0},{"x":30.7576707064735,"y":0}]}
,{
"name": "orf00008",
"orfname": "orf00008",
"gene_start": 2036,
"gene_end": 2215,
"gene_strand": "+",
"real_start": 1168,
"real_end": 1347 ,
"real_strand": "-",
"name": "orf00008",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 62.828850133018,
"motifs": "",
"function": "",
"annotation":"",
"protein":"VLPEKRKAGTLPEPFTIIESDIRKSSLTLKNNKLTKQYCTHNHWLYIQLKITLLYFSCQ",
"dna":"GTGCTACCTGAGAAAAGAAAAGCAGGTACACTACCTGAGCCATTCACAATCATCGAATCTGACATAAGAAAATCCTCTTTAACTTTAAAAAACAATAAATTAACAAAACAATACTGTACACATAACCACTGGTTATATATACAGTTGAAAATTACGCTGCTTTATTTTTCCTGTCAA",
"points": [{"x":60.1832692876145,"y":0},{"x":60.1832692876145,"y":2},{"x":65.0744309784215,"y":2},{"x":65.4744309784215,"y":1},{"x":65.0744309784215,"y":0}]}
,{
"name": "sORF_6",
"orfname": "sORF_6",
"gene_start": 2187,
"gene_end": 2393,
"gene_strand": "-",
"real_start": 990,
"real_end": 1196 ,
"real_strand": "+",
"name": "sORF_6",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 67.6913981673071,
"motifs": "RBS=CATATCCGGCAGCGATAA
",
"function": "",
"annotation":"",
"protein":"VQPAGVCLFCSVGGDQILFCSRYLLSAFSPDVIRCCFSAANLPFLIFIRVIQITKMKIHTIDRKNKAAx",
"dna":"GTGCAGCCAGCAGGCGTTTGTCTGTTTTGCTCAGTCGGTGGCGACCAGATTTTGTTTTGCTCACGTTATCTCCTCTCTGCTTTTTCTCCTGATGTTATCCGGTGCTGTTTTTCTGCTGCGAATCTTCCCTTCCTGATTTTTATAAGGGTGATTCAGATCACAAAAATGAAAATTCATACTATTGACAGGAAAAATAAAGCAGCGTAA",
"points": [{"x":64.6467632279042,"y":1},{"x":65.0467632279042,"y":2},{"x":70.73603310671,"y":2},{"x":70.73603310671,"y":0},{"x":65.0467632279042,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 2217,
"gene_end": 2333,
"gene_strand": "+",
"real_start": 1050,
"real_end": 1166 ,
"real_strand": "-",
"name": "sORF_1",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 67.24800472953,
"motifs": "RBS=ATTTTTCCTGTCAATAGT
",
"function": "",
"annotation":"",
"protein":"MNFHFCDLNHPYKNQEGKIRSRKTAPDNIRRKSREEITx",
"dna":"ATGAATTTTCATTTTTGTGATCTGAATCACCCTTATAAAAATCAGGAAGGGAAGATTCGCAGCAGAAAAACAGCACCGGATAACATCAGGAGAAAAAGCAGAGAGGAGATAACGTGA",
"points": [{"x":65.5335501034585,"y":0},{"x":65.5335501034585,"y":2},{"x":68.5624593556015,"y":2},{"x":68.9624593556015,"y":1},{"x":68.5624593556015,"y":0}]}
,{
"name": "sORF_5",
"orfname": "sORF_5",
"gene_start": 2258,
"gene_end": 2479,
"gene_strand": "-",
"real_start": 904,
"real_end": 1125 ,
"real_strand": "+",
"name": "sORF_5",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 70.0118238250074,
"motifs": "RBS=ACTGATTTCACTGACCAG
",
"function": "",
"annotation":"",
"protein":"MAQVGLCQCVNVFLDEVTGCPLFISGSDKCSQQAFVCFAQSVATRFCFAHVISSLLFLLMLSGAVFLLRIFPSx",
"dna":"ATGGCGCAGGTCGGCCTGTGTCAGTGTGTAAACGTGTTTCTGGATGAGGTCACGGGCTGTCCGCTCTTCATATCCGGCAGCGATAAGTGCAGCCAGCAGGCGTTTGTCTGTTTTGCTCAGTCGGTGGCGACCAGATTTTGTTTTGCTCACGTTATCTCCTCTCTGCTTTTTCTCCTGATGTTATCCGGTGCTGTTTTTCTGCTGCGAATCTTCCCTTCCTGA",
"points": [{"x":66.7454921667159,"y":1},{"x":67.1454921667159,"y":2},{"x":73.2781554832988,"y":2},{"x":73.2781554832988,"y":0},{"x":67.1454921667159,"y":0}]}
,{
"name": "sORF_2",
"orfname": "sORF_2",
"gene_start": 2330,
"gene_end": 2626,
"gene_strand": "+",
"real_start": 757,
"real_end": 1053 ,
"real_strand": "-",
"name": "sORF_2",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 73.2485959207804,
"motifs": "RBS=AAGCAGAGAGGAGATAAC
",
"function": "",
"annotation":"",
"protein":"VSKTKSGRHRLSKTDKRLLAALIAAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKFLNGKKPEEGLNAWKGDLPx",
"dna":"GTGAGCAAAACAAAATCTGGTCGCCACCGACTGAGCAAAACAGACAAACGCCTGCTGGCTGCACTTATCGCTGCCGGATATGAAGAGCGGACAGCCCGTGACCTCATCCAGAAACACGTTTACACACTGACACAGGCCGACCTGCGCCATCTGGTCAGTGAAATCAGTAACGGTGTGGGACAGTCACAGGCCTACGATGCGATTTACCAGGCAAGACGCATTCGTCTCGCCCGTAAATTCCTGAACGGAAAAAAACCGGAAGAAGGGCTGAACGCCTGGAAGGGTGATTTACCATAA",
"points": [{"x":68.8737806680461,"y":0},{"x":68.8737806680461,"y":2},{"x":77.2234111735146,"y":2},{"x":77.6234111735146,"y":1},{"x":77.2234111735146,"y":0}]}
,{
"name": "sORF_3",
"orfname": "sORF_3",
"gene_start": 2504,
"gene_end": 2626,
"gene_strand": "+",
"real_start": 757,
"real_end": 879 ,
"real_strand": "-",
"name": "sORF_3",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 75.8202778598877,
"motifs": "RBS=AGTGAAATCAGTAACGGT
",
"function": "",
"annotation":"",
"protein":"VGQSQAYDAIYQARRIRLARKFLNGKKPEEGLNAWKGDLPx",
"dna":"GTGGGACAGTCACAGGCCTACGATGCGATTTACCAGGCAAGACGCATTCGTCTCGCCCGTAAATTCCTGAACGGAAAAAAACCGGAAGAAGGGCTGAACGCCTGGAAGGGTGATTTACCATAA",
"points": [{"x":74.0171445462607,"y":0},{"x":74.0171445462607,"y":2},{"x":77.2234111735146,"y":2},{"x":77.6234111735146,"y":1},{"x":77.2234111735146,"y":0}]}
,{
"name": "sORF_4",
"orfname": "sORF_4",
"gene_start": 2533,
"gene_end": 2643,
"gene_strand": "-",
"real_start": 740,
"real_end": 850 ,
"real_strand": "+",
"name": "sORF_4",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 76.5001477978126,
"motifs": "RBS=
",
"function": "",
"annotation":"",
"protein":"VRTISDYGKSPFQAFSPSSGFFPFRNLRARRMRLAWx",
"dna":"GTGCGCACAATAAGTGATTATGGTAAATCACCCTTCCAGGCGTTCAGCCCTTCTTCCGGTTTTTTTCCGTTCAGGAATTTACGGGCGAGACGAATGCGTCTTGCCTGGTAA",
"points": [{"x":74.8743718592965,"y":1},{"x":75.2743718592965,"y":2},{"x":78.1259237363287,"y":2},{"x":78.1259237363287,"y":0},{"x":75.2743718592965,"y":0}]}
,{
"name": "orf00015",
"orfname": "orf00015",
"gene_start": 2613,
"gene_end": 2816,
"gene_strand": "+",
"real_start": 567,
"real_end": 770 ,
"real_strand": "-",
"name": "orf00015",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 80.2394324563996,
"motifs": "",
"function": "",
"annotation":"",
"protein":"VIYHNHLLCAPLKRAQRAFGAKTVKRDVFPRVNRKNASGTLSARCMTMHKTEWRAVWARLMPIRRIF",
"dna":"GTGATTTACCATAATCACTTATTGTGCGCACCGTTAAAACGCGCTCAGCGCGCTTTTGGCGCAAAAACCGTAAAAAGGGATGTTTTCCCCCGGGTAAACCGGAAAAATGCGTCAGGAACGCTTTCAGCGCGTTGCATGACTATGCATAAAACTGAATGGCGAGCGGTTTGGGCGCGTCTGATGCCCATAAGGCGTATTTTC",
"points": [{"x":77.2391368607745,"y":0},{"x":77.2391368607745,"y":2},{"x":82.8397280520248,"y":2},{"x":83.2397280520248,"y":1},{"x":82.8397280520248,"y":0}]}
,{
"name": "orf00016",
"orfname": "orf00016",
"gene_start": 2878,
"gene_end": 3006,
"gene_strand": "-",
"real_start": 377,
"real_end": 505 ,
"real_strand": "+",
"name": "orf00016",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 86.9642329293526,
"motifs": "",
"function": "",
"annotation":"",
"protein":"MTRQRVVGDLSMTQHTVALVFREGESPESREEKYWMTRRRLP",
"dna":"ATGACTCGGCAACGAGTCGTCGGTGATTTATCGATGACTCAACACACTGTCGCTCTGGTGTTCAGAGAAGGCGAGTCGCCAGAGAGTCGCGAGGAAAAATACTGGATGACTCGCCGACGACTCCCG",
"points": [{"x":85.0724209281703,"y":1},{"x":85.4724209281703,"y":2},{"x":88.856044930535,"y":2},{"x":88.856044930535,"y":0},{"x":85.4724209281703,"y":0}]}
,{
"name": "orf00017",
"orfname": "orf00017",
"gene_start": 3062,
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"gene_strand": "-",
"real_start": 163,
"real_end": 321 ,
"real_strand": "+",
"name": "orf00017",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 92.8465858705291,
"motifs": "",
"function": "",
"annotation":"",
"protein":"LHKIPLCDEYCLIKNPRSSSRKTRVCSHAPDAHTPRKTNFLLISFLNQVVMF",
"dna":"TTGCATAAAATTCCGCTCTGCGATGAGTACTGTTTAATCAAAAATCCCCGCAGTTCCTCCAGAAAAACGCGAGTCTGTTCTCATGCCCCGGATGCCCACACCCCACGCAAAACTAACTTTTTGCTGATTTCTTTTTTAAATCAGGTTGTTATGTTT",
"points": [{"x":90.5113804315696,"y":1},{"x":90.9113804315696,"y":2},{"x":95.1817913094886,"y":2},{"x":95.1817913094886,"y":0},{"x":90.9113804315696,"y":0}]}
]}