{
"AOIs": [
{
"name": "NZ_WDES010001221.1234.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_xylanisolvens/GCF_000178215.1_ASM17821v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00004",
"orfname": "orf00004",
"gene_start": 503,
"gene_end": 853,
"gene_strand": "+",
"real_start": 504,
"real_end": 854 ,
"real_strand": "+",
"name": "orf00004",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 12.9661503155479,
"motifs": "",
"function": "",
"annotation":"",
"protein":"VTFSPYALLCRSASCPERYLSVLFSTSKRVWMLFWSSSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSTACCCLFIFSFSPFCLSSALCDYIAYHFSTVLPPVFCRLTL",
"dna":"GTGACATTTTCTCCTTACGCTCTGTTGTGCCGTTCGGCATCCTGTCCTGAGCGTTATCTCTCTGTGCTATTTTCTACTTCAAAGCGTGTCTGGATGCTGTTCTGGAGTTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTAGCCTGTTCGTCAGCATCGAGTGCGTCCAGCTTTTCGAGCAGCGTCAGGCTTTGGCTTTTTATGAATCCTGCCATGTTGAGTACGGCTTGCTGCTGCTTGTTCATCTTTTCGTTTTCTCCGTTCTGTCTGTCATCTGCGTTGTGTGATTATATCGCGTACCACTTTTCGACTGTTTTACCGCCGGTATTCTGCCGTCTGACGCTT",
"points": [{"x":9.61943010135781,"y":0},{"x":9.61943010135781,"y":2},{"x":15.912870529738,"y":2},{"x":16.312870529738,"y":1},{"x":15.912870529738,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 945,
"gene_end": 1037,
"gene_strand": "+",
"real_start": 946,
"real_end": 1038 ,
"real_strand": "+",
"name": "sORF_1",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 18.9519984700708,
"motifs": "RBS=ACAGGACAGGATGTGTAA
",
"function": "",
"annotation":"",
"protein":"LLYRAYMHAITITLVRALPRHPCQIRSHVLx",
"dna":"TTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTTGCCCCGACACCCATGTCAGATACGGAGCCATGTTTTATGA",
"points": [{"x":18.0722891566265,"y":0},{"x":18.0722891566265,"y":2},{"x":19.431707783515,"y":2},{"x":19.831707783515,"y":1},{"x":19.431707783515,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 1010,
"gene_end": 1357,
"gene_strand": "+",
"real_start": 1011,
"real_end": 1358 ,
"real_strand": "+",
"name": "orf00007",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 22.6333907056799,
"motifs": "",
"function": "",
"annotation":"",
"protein":"MSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD",
"dna":"ATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCCGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGATCGGGTACTGAAAGAAGTTATGAGACTGGGGGCGTTACAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGGGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGAT",
"points": [{"x":19.3153566647543,"y":0},{"x":19.3153566647543,"y":2},{"x":25.5514247466055,"y":2},{"x":25.9514247466055,"y":1},{"x":25.5514247466055,"y":0}]}
,{
"name": "orf00008",
"orfname": "orf00008",
"gene_start": 1418,
"gene_end": 1558,
"gene_strand": "-",
"real_start": 1419,
"real_end": 1559 ,
"real_strand": "-",
"name": "orf00008",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 28.4566838783706,
"motifs": "",
"function": "",
"annotation":"",
"protein":"LYAPLKRAERDSDADTAKRDVLPRKNRKDASGSFSALCIAMHESEW",
"dna":"TTGTACGCACCACTGAAACGCGCTGAACGCGATTCTGACGCAGACACCGCAAAAAGAGATGTTTTACCCCGGAAAAACAGGAAGGATGCGTCAGGATCGTTTTCAGCTCTCTGCATAGCTATGCATGAAAGCGAATGG",
"points": [{"x":27.1179957926946,"y":1},{"x":27.5179957926946,"y":2},{"x":29.7953719640467,"y":2},{"x":29.7953719640467,"y":0},{"x":27.5179957926946,"y":0}]}
,{
"name": "orf00011",
"orfname": "orf00011",
"gene_start": 1582,
"gene_end": 2001,
"gene_strand": "-",
"real_start": 1583,
"real_end": 2002 ,
"real_strand": "-",
"name": "orf00011",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 34.2608529355517,
"motifs": "",
"function": "",
"annotation":"",
"protein":"MRRTGNKLCLIAMITATVALTACTPKGSVEQHTRHYVYASDDGFDPNFSTQKADTTRMMVPFFRQFWDMGAKDKATGKSRSDVQQRIQQFHSQEFLNSLRGTTQFAGTDYRSKDLTPKKSRLLADTISAVYLDGYEGRQ",
"dna":"ATGAGACGTACCGGAAACAAACTTTGTCTTATCGCCATGATAACAGCAACAGTAGCTCTCACAGCCTGTACCCCAAAGGGCAGCGTGGAACAACATACCCGGCATTACGTATATGCTTCTGATGACGGTTTTGATCCCAACTTTTCCACCCAAAAAGCCGACACAACACGAATGATGGTGCCTTTTTTTCGGCAGTTCTGGGATATGGGAGCTAAAGATAAAGCGACAGGAAAATCACGGAGTGATGTGCAACAACGCATTCAACAGTTTCACAGCCAGGAATTTTTAAACTCACTCCGGGGCACAACTCAATTTGCGGGTACTGATTACCGCAGCAAAGACCTTACCCCGAAAAAATCCAGGCTGCTGGCTGACACGATTTCTGCGGTTTATCTCGATGGCTACGAGGGCAGACAG",
"points": [{"x":30.2543507362784,"y":1},{"x":30.6543507362784,"y":2},{"x":38.267355134825,"y":2},{"x":38.267355134825,"y":0},{"x":30.6543507362784,"y":0}]}
,{
"name": "orf00013",
"orfname": "orf00013",
"gene_start": 2082,
"gene_end": 2519,
"gene_strand": "-",
"real_start": 2083,
"real_end": 2520 ,
"real_strand": "-",
"name": "orf00013",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 43.9950277299675,
"motifs": "",
"function": "",
"annotation":"",
"protein":"MGHCNFMAWHTLRDALKMTGRSRSQFYRDMRSGLVSYRTSQDGRREFETSELIRAYGELKRNETPERHTQGHSEKPHDQQTERILRELNELKQCLTLMLEDKQAQDTERRRQEAERKQLQNEIAQLRQALEQEKKRGFWSRLFGH",
"dna":"ATGGGACACTGTAACTTTATGGCATGGCACACACTCCGGGACGCACTGAAAATGACTGGAAGATCGCGTTCACAGTTTTACCGTGATATGCGCTCAGGTCTTGTCAGTTACCGTACCAGCCAGGACGGACGACGGGAGTTTGAAACCAGTGAACTGATCCGGGCATACGGCGAATTAAAGCGGAATGAGACACCAGAAAGGCACACTCAAGGACACTCAGAAAAACCTCATGATCAGCAGACAGAACGCATTCTCCGGGAACTGAATGAGCTGAAACAATGCCTGACGCTGATGCTTGAGGATAAACAAGCCCAGGATACGGAGCGCCGGCGCCAGGAAGCAGAACGGAAACAGCTACAGAATGAGATAGCCCAGCTCAGGCAGGCTCTGGAGCAGGAAAAGAAACGGGGATTCTGGTCCAGGCTGTTCGGTCAC",
"points": [{"x":39.8164084911073,"y":1},{"x":40.2164084911073,"y":2},{"x":48.1736469688277,"y":2},{"x":48.1736469688277,"y":0},{"x":40.2164084911073,"y":0}]}
,{
"name": "orf00014",
"orfname": "orf00014",
"gene_start": 2532,
"gene_end": 2663,
"gene_strand": "-",
"real_start": 2533,
"real_end": 2664 ,
"real_strand": "-",
"name": "orf00014",
"color": "#d5dce8",
"yline": 10,
"angle": -60,
"xtext": 49.6748900363358,
"motifs": "",
"function": "",
"annotation":"",
"protein":"VDFHFCENDQKNSHPHHVLFPPDATKTSTNITVLRPHYVLLKP",
"dna":"GTGGATTTTCATTTTTGTGAAAACGATCAAAAAAACAGCCACCCACACCACGTGCTATTTCCACCCGATGCCACAAAAACCAGCACAAACATTACCGTTCTCAGACCTCATTATGTTTTACTGAAACCA",
"points": [{"x":48.4222604704532,"y":1},{"x":48.8222604704532,"y":2},{"x":50.9275196022184,"y":2},{"x":50.9275196022184,"y":0},{"x":48.8222604704532,"y":0}]}
,{
"name": "16.3;Colicin_E1_protein",
"orfname": "orf00015",
"gene_start": 2779,
"gene_end": 4344,
"gene_strand": "+",
"real_start": 2780,
"real_end": 4345 ,
"real_strand": "+",
"name": "16.3;Colicin_E1_protein",
"color": "#70c947",
"yline": 10,
"angle": -60,
"xtext": 68.1105373876458,
"motifs": "",
"function": "16.3;Colicin_E1_protein",
"annotation":"Evalue=1.72e-177 match=98.824%;",
"protein":"METAVAYYKDGVPYDDKGQVIITLLNGNPDGSGSGGGGGTGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQHLKDIVNEALRHNSTHPKVIDLAHANNAAMQAEAERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEKEQAETERQLKLAEDEEKRLAALSEEARAVEVAQKNLAAAQSELAKVDEEINTLNTRLSSSIHARDAETNTLSGKRNELDQASAKYKELDERVKLLSPRANDPLQSRPFFEATRLRARAGDEMEEKQKQVTASETRLNQISSEINGIQEAISQANNKRSTAVSRIHDAEDNLKTAQTNLLNSQIKDAVDATVSFYQTLSEKYGEKYSKMAQELADKSKGKKISNVNEALAAFEKYKDVLNKKFSKADRDAIFNALEAVKYEDWAKHLDQFAKYLKITGHVSFGYDVVSDILKIKDTGDWKPLFLTLEKKAVDAGVSYVVVLLFSVLAGTTLGIWGIAIVTGILCAFIDKNKLNTINEVLGI",
"dna":"ATGGAAACAGCTGTAGCGTACTATAAAGATGGTGTTCCTTATGATGATAAGGGGCAGGTAATCATTACTCTTTTGAATGGTAATCCAGACGGGAGTGGCTCTGGCGGTGGTGGTGGAACTGGAGGTAGCAAAAGTGAAAGTTCTGCAGCCATTCATGCCACAGCTAAATGGTCTACTGCTCAATTGAAGAAAACGCAGGCAGAACAGGCTGCCCGAGCAAAAGCTGCCGCAGAAGCACAGGCTAAAGCAAAAGCAAACCGGGATGCGCTGACTCAACATCTGAAGGATATTGTGAATGAGGCGCTTCGCCATAATTCCACTCATCCGAAGGTTATTGACCTGGCTCATGCCAATAATGCAGCGATGCAGGCAGAAGCAGAGCGGTTGCGCCTTGCAAAAGCAGAAGAAAAAGCCCGTAAAGAAGCGGAAGCTGCGGAAAAGGCTTTTCAGGAAGCAGAACAACGACGTAAAGAGATAGAGAAGGAGCAGGCTGAAACAGAACGCCAATTGAAACTGGCTGAGGATGAAGAGAAACGCCTGGCAGCATTGAGTGAAGAGGCCCGGGCTGTGGAGGTGGCACAAAAAAATCTTGCTGCTGCACAATCTGAGCTGGCGAAAGTGGATGAAGAGATTAATACGCTCAATACCCGTTTAAGCTCCAGTATTCATGCCCGTGATGCAGAAACGAATACGCTGTCCGGAAAACGAAATGAGTTGGATCAGGCATCTGCTAAATATAAAGAACTGGATGAAAGGGTTAAACTTTTATCTCCTAGGGCGAATGATCCGCTTCAGAGTCGTCCTTTTTTTGAGGCCACCAGACTACGGGCGAGAGCTGGTGATGAGATGGAGGAAAAACAAAAGCAGGTAACAGCATCAGAAACGCGTCTTAACCAGATTAGCTCTGAGATAAATGGAATCCAAGAGGCTATTTCTCAGGCTAATAATAAGCGAAGTACAGCAGTTTCACGTATTCATGATGCTGAAGATAATTTGAAAACAGCACAGACTAATCTCCTGAACTCGCAGATTAAGGATGCTGTGGATGCAACAGTTAGCTTTTATCAAACGCTATCTGAAAAATATGGTGAAAAATATTCAAAAATGGCACAGGAGCTTGCTGATAAATCTAAAGGTAAGAAAATCAGCAATGTGAATGAAGCTCTAGCTGCTTTTGAGAAATACAAGGATGTATTAAATAAGAAATTCAGCAAAGCAGACCGTGATGCAATTTTCAATGCACTGGAGGCGGTTAAGTATGAAGACTGGGCTAAGCATTTAGATCAGTTTGCCAAGTACTTGAAGATTACGGGACATGTTTCTTTTGGATATGATGTGGTATCTGATATCCTAAAAATTAAGGATACAGGTGACTGGAAGCCGCTATTTCTTACATTAGAGAAGAAAGCTGTAGATGCTGGAGTTAGTTATGTTGTTGTTTTACTTTTTAGTGTGCTTGCTGGAACTACATTAGGTATCTGGGGGATTGCTATTGTTACAGGCATTCTATGTGCCTTTATTGATAAGAATAAACTTAATACTATAAATGAGGTGTTGGGTATT",
"points": [{"x":53.1459170013387,"y":0},{"x":53.1459170013387,"y":2},{"x":82.6751577739529,"y":2},{"x":83.075157773953,"y":1},{"x":82.6751577739529,"y":0}]}
,{
"name": "orf00016",
"orfname": "orf00016",
"gene_start": 4341,
"gene_end": 4682,
"gene_strand": "-",
"real_start": 4342,
"real_end": 4683 ,
"real_strand": "-",
"name": "orf00016",
"color": "#8fbcb9",
"yline": 10,
"angle": -60,
"xtext": 86.2784471218206,
"motifs": "PF03526",
"function": "Colicin-E1 immunity protein ",
"annotation":"Species=Escherichia coli | | I
match=92.920%|Evalue=1.55e-68
UniRef:IMM1_ECOLX",
"protein":"MSLRYYIKNILFGLYCALIYIYLITKNNEGYYFLASDKMLYAIVISTILCPYSKYAIEHIFFKFIKKDFFIKRKNLNNAPVAKLNLFMLYNLLCLVLAIPFGLLGLFISIKNN",
"dna":"ATGAGTTTAAGATACTACATAAAAAATATTTTATTTGGCCTATACTGCGCACTTATATATATATACCTTATAACAAAAAACAACGAAGGGTATTATTTCCTAGCGTCAGATAAGATGCTATACGCAATAGTGATAAGCACTATTCTATGCCCATATTCAAAATATGCTATTGAACACATATTTTTTAAGTTCATAAAGAAAGATTTTTTCATAAAAAGAAAAAACCTAAATAATGCCCCCGTGGCAAAATTAAACCTATTTATGCTATACAATCTACTTTGTTTGGTCCTAGCAATCCCATTTGGATTGCTAGGACTGTTTATATCAATAAAGAATAAT",
"points": [{"x":83.017785427424,"y":1},{"x":83.417785427424,"y":2},{"x":89.5391088162173,"y":2},{"x":89.5391088162173,"y":0},{"x":83.417785427424,"y":0}]}
,{
"name": "orf00017",
"orfname": "orf00017",
"gene_start": 4730,
"gene_end": 4867,
"gene_strand": "+",
"real_start": 4731,
"real_end": 4868 ,
"real_strand": "+",
"name": "orf00017",
"color": "#8fbcb9",
"yline": 10,
"angle": -60,
"xtext": 91.7670682730924,
"motifs": "",
"function": "Lysis protein for colicin E1* OS=Shigella sonnei OX=624 GN=kil PE=3 SV=1",
"annotation":"Species='-'
match=100.000%|Evalue=1.11e-26
UniRef:sp|P21185|LYS3_SHISO",
"protein":"MRKRFFVGIFAINLLVGCQANYIRDVQGGTVAPSSSSKLTGISVQ",
"dna":"ATGAGGAAAAGATTTTTTGTGGGAATATTCGCTATAAACCTCCTTGTTGGATGTCAGGCTAACTATATACGTGATGTTCAGGGAGGGACTGTGGCTCCATCATCTTCTTCTAAATTGACGGGGATCTCTGTTCAG",
"points": [{"x":90.4570663606808,"y":0},{"x":90.4570663606808,"y":2},{"x":92.6770701855039,"y":2},{"x":93.0770701855039,"y":1},{"x":92.6770701855039,"y":0}]}
,{
"name": "orf00018",
"orfname": "orf00018",
"gene_start": 5064,
"gene_end": 5222,
"gene_strand": "-",
"real_start": 5065,
"real_end": 5223 ,
"real_strand": "-",
"name": "orf00018",
"color": "#8fbcb9",
"yline": 10,
"angle": -60,
"xtext": 98.3553260661694,
"motifs": "",
"function": "Uncharacterized 9.4 kDa protein OS=Escherichia coli OX=562 PE=4 SV=1",
"annotation":"Species='-'
match=88.095%|Evalue=1.75e-22
UniRef:sp|P03851|YPB3_ECOLX",
"protein":"VHEPPVQPDRCALSGNYRLESNPVRHDLAPLAAAVGNLVSRAMMAQMVQQSS",
"dna":"GTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAGCGCCACTGGCAGCAGCCGTTGGTAACTTGGTTAGCAGAGCGATGATGGCGCAAATGGTGCAACAGAGTTCT",
"points": [{"x":96.8445209409065,"y":1},{"x":97.2445209409065,"y":2},{"x":99.8661311914324,"y":2},{"x":99.8661311914324,"y":0},{"x":97.2445209409065,"y":0}]}
]}