Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIG010000131.5861.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIG010000131.5861.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIG010000131.5861.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIG010000131.5861.AOI_01 Sequence length = 13387 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 126 132 323 195 189 6.31 99 - - 99 - - - 0002 +2 251 263 391 138 126 3.32 99 - 99 - - - - -2 718 673 503 213 168 5.08 0 - - - - 0 99 0003 -3 1838 1811 336 1500 1473 13.65 99 - - - - - 99 +3 1989 2034 2258 267 222 5.10 0 - - 0 99 - - +2 2792 2942 3076 282 132 7.51 0 - 0 - 99 - - 0004 -1 3453 3399 1933 1518 1464 14.60 99 - - - 99 - - 0005 -3 3623 3623 3501 120 120 9.60 99 - - - - - 99 0006 -3 3806 3782 3645 159 135 9.21 99 - - - - - 99 0007 +3 3675 3675 3818 141 141 1.81 99 - - 99 - - - 0008 -3 4133 4112 3861 270 249 3.94 99 - - - - - 99 0009 +2 4115 4115 4237 120 120 4.32 49 - 49 - 50 - - 0010 -1 4278 4275 4069 207 204 1.89 99 - - - 99 - - -1 4551 4449 4327 222 120 -3.01 0 - 0 - 0 99 - +2 4238 4253 4582 342 327 -4.10 0 - 0 - - 99 - +3 4704 4728 4865 159 135 -6.90 0 - 0 0 - 99 - +2 4676 4820 4945 267 123 0.78 0 - 0 - - 99 - 0011 -2 5074 5053 4121 951 930 8.55 99 - - - - 99 - 0012 +2 4982 5045 5176 192 129 -4.13 99 - 99 - - - - +3 5100 5115 5291 189 174 -4.56 0 - - 0 - - 99 +3 5292 5421 5555 261 132 2.12 0 - - 0 - - 99 +2 5783 5792 5917 132 123 2.63 0 - 0 - - - 99 -1 6363 6345 6184 177 159 1.63 0 0 - - 0 - 99 +3 6288 6312 6461 171 147 -2.90 0 0 - 0 - - 99 +1 5977 6106 6498 519 390 0.59 0 0 - - - - 99 0013 -3 6902 6902 5055 1845 1845 10.72 99 - - - - - 99 0014 +1 6730 6733 6912 180 177 3.43 17 17 - 82 - - - 0015 +3 6486 6702 6926 438 222 3.48 99 - - 99 - - - +1 6913 7159 7302 387 141 0.47 0 0 0 - - - 99 +2 7154 7199 7345 189 144 -4.73 0 - 0 - - - 99 -1 7362 7362 7237 123 123 -6.47 0 - - - 0 - 99 +2 7385 7433 7579 192 144 -7.56 0 - 0 0 - - 99 +3 7278 7494 7640 360 144 0.89 0 - - 0 - - 99 +3 7641 7668 7796 153 126 5.60 0 - - 0 - 0 99 -2 7813 7807 7664 147 141 -1.53 0 - - - - 0 99 +3 8109 8118 8276 165 156 4.58 0 - - 0 - - 99 0016 -3 8297 8267 6951 1344 1314 10.93 99 - - - - - 99 -3 8735 8735 8571 162 162 1.05 0 - 99 - - - 0 -3 8963 8954 8814 147 138 -0.55 0 - 99 - 0 - 0 -1 8976 8886 8677 297 207 1.45 0 - 99 - 0 - - -1 9309 9285 9163 144 120 -2.25 0 - 99 - 0 0 - -2 9328 9262 8840 486 420 0.97 0 - 99 - - 0 - 0017 +2 8510 8513 9496 984 981 7.89 99 - 99 - - - - 0018 +1 9238 9361 9501 261 138 -1.68 29 29 - - 70 - - 0019 -2 9667 9658 9437 228 219 3.12 99 - - - - 99 - +1 9919 9931 10095 174 162 2.16 1 1 98 - - - - 0020 -1 10386 10377 10252 132 123 1.48 52 - 47 - 52 - - -3 10604 10580 10452 150 126 -0.87 0 - 99 - - 0 0 -2 10696 10612 10448 246 162 -0.58 0 - 99 - - 0 - -1 10707 10680 10495 210 183 1.84 0 - 99 - 0 0 - +1 10585 10591 10731 144 138 -0.88 0 0 99 - - - - +3 11124 11157 11279 153 120 -1.90 0 - 99 0 - 0 - -2 11323 11146 11024 297 120 4.92 0 - 99 - - 0 - -3 11345 11324 11202 141 120 -2.42 0 - 99 - - 0 0 0021 +2 9650 9659 11707 2055 2046 7.20 99 - 99 - - - - -2 11737 11704 11522 213 180 0.75 0 - 99 - - 0 - 0022 -1 11778 11748 11614 162 132 0.33 99 - - - 99 - - 0023 +2 11708 11729 11869 159 138 -4.06 99 - 99 - - - - +3 11787 11799 11921 132 120 -5.15 0 - - 0 - 99 - +3 11955 11997 12122 165 123 -2.30 0 - 0 0 - 99 - 0024 -2 12712 12703 11738 972 963 7.73 99 - - - - 99 - 0025 +2 11972 12074 12751 777 675 -2.74 10 - 10 89 - - - 0026 +3 12624 12630 12857 231 225 1.33 99 - - 99 - - - +2 12755 12845 13105 348 258 2.88 0 - 0 - - 99 - 0027 -2 13126 13117 12722 402 393 5.94 99 - - - - 99 - 0028 -3 13265 13229 13107 156 120 7.41 99 - - - - - 99