Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIF010000171.5793.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIF010000171.5793.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIF010000171.5793.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIF010000171.5793.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 463 382 224 237 156 -0.01 0 - 99 - - 0 - 0001 +2 2 20 1090 1086 1068 10.52 99 - 99 - - - - +3 1401 1461 1586 183 123 -7.74 0 - 99 0 - 0 - -1 1656 1656 1528 126 126 -0.19 0 - 99 - 0 - - -1 2088 2076 1936 150 138 -1.75 0 - 99 - 0 - - +1 1993 2002 2127 132 123 -6.29 0 0 99 - - - - -2 2419 2407 2255 162 150 0.48 0 - 99 0 - 0 - +1 2278 2287 2451 171 162 -8.74 0 0 99 0 - - - +3 2241 2241 2564 321 321 -1.84 0 - 99 0 - - - +1 2644 2686 2826 180 138 -7.00 0 0 99 - - - - -1 3066 2988 2842 222 144 -0.96 0 - 99 - 0 - - +3 3162 3174 3308 144 132 -7.67 0 - 99 0 - - - -1 3321 3321 3178 141 141 -0.64 0 - 99 - 0 - - -2 3331 3316 3191 138 123 0.28 0 - 99 - 0 0 - -1 3705 3543 3421 282 120 1.51 0 - 99 - 0 - - -1 3897 3891 3706 189 183 -0.35 0 - 99 - 0 0 - -2 3967 3904 3674 291 228 2.41 0 - 99 - - 0 - -1 4119 4104 3919 198 183 0.46 0 - 99 - 0 - - -2 4264 4189 4019 243 168 -0.58 0 - 99 - - 0 - +3 4086 4110 4268 180 156 -5.98 0 - 99 0 - 0 - -2 4393 4390 4265 126 123 0.77 0 - 99 - 0 0 - -1 4428 4332 4210 216 120 0.46 0 0 99 - 0 - - -3 4457 4439 4287 168 150 -7.97 0 - 99 - - - 0 -2 4570 4546 4397 171 147 -1.85 0 - 99 - - 0 - -1 4974 4971 4849 123 120 6.46 0 - 99 - 0 - - -1 5151 5097 4975 174 120 1.58 0 - 99 - 0 0 - 0002 +2 1223 1226 5158 3933 3930 10.68 99 - 99 - - - - -2 5176 5104 4931 243 171 -1.42 0 - 99 - - 0 - 0003 -1 5295 5295 5161 132 132 4.65 99 - - - 99 - - -2 5665 5602 5450 213 150 -3.10 0 - - 99 - 0 - 0004 +3 5406 5424 5669 261 243 6.65 99 - - 99 - - - 0005 -1 5784 5775 5599 183 174 -1.29 99 - - - 99 - - +1 5851 5899 6042 189 141 4.76 0 0 - 0 - - 99 0006 +3 5670 5745 6134 462 387 -2.00 99 - - 99 - - - +1 6064 6070 6273 207 201 1.11 0 0 - - - - 99 +1 6274 6289 6426 150 135 -1.20 0 0 - 0 - - 99 +3 6135 6279 6482 345 201 -1.21 0 - - 0 - - 99 -1 6603 6552 6430 171 120 -4.73 0 - 0 - 0 - 99 +1 6544 6607 6735 189 126 -2.12 0 0 - 0 - - 99 -2 6910 6811 6656 252 153 -8.10 0 - 0 - - 0 99 +3 6843 6897 7055 210 156 -1.17 0 - - 0 - - 99 0007 -3 7127 7115 5769 1356 1344 8.23 99 - - - - - 99 +1 6979 7012 7146 165 132 -6.99 3 3 96 - - - - 0008 -1 7368 7344 7138 228 204 3.46 99 - - - 99 - - -3 7484 7472 7341 141 129 -9.92 0 - 99 - - 0 0 -1 7779 7737 7579 198 156 -0.46 0 - 99 - 0 - - 0009 +2 7244 7265 7906 660 639 11.48 99 - 99 - - - - 0010 -2 8038 7915 7676 360 237 -0.25 99 - - - - 99 - -3 8078 7961 7800 276 159 -12.70 0 - - - - 99 0 -1 8100 8031 7909 189 120 -4.63 0 - 99 - 0 0 0 -2 8404 8308 8039 363 267 -2.09 0 - 99 - - 0 - -1 8472 8454 8323 147 129 -9.91 0 - 99 - 0 - - -1 8649 8646 8491 156 153 -8.43 0 - 99 - 0 0 0 -2 8791 8602 8432 357 168 -2.61 0 - 99 - - 0 0 -1 8970 8961 8803 165 156 -5.21 0 - 99 - 0 - - 0011 +2 7913 7919 8998 1083 1077 11.11 99 - 99 - - - - -1 9288 9243 9103 183 138 0.03 0 99 - - 0 - - -3 9614 9476 9300 312 174 -0.41 0 99 - - - - 0 -1 9708 9531 9394 312 135 1.38 0 99 - - 0 - 0 +2 9665 9686 9847 180 159 -11.84 0 99 0 - - - - -3 9965 9950 9819 144 129 3.29 0 99 - - 0 - 0 0012 +1 8983 8995 9969 984 972 12.30 99 99 - - - - - -1 9981 9903 9709 270 192 -2.41 0 99 - - 0 - - -3 10283 10241 10110 171 129 -5.03 0 0 99 - - - 0 +1 10081 10156 10302 219 144 -5.55 0 0 99 - - - - -1 10674 10671 10549 123 120 0.86 0 - 99 - 0 - - -1 11091 11073 10951 138 120 -4.73 0 - 99 - 0 0 - 0013 +2 9995 9998 11155 1158 1155 11.71 99 - 99 - - - - -2 11161 11095 10664 495 429 0.44 0 - 99 - - 0 - -1 11433 11412 11290 141 120 -7.22 0 - - 99 0 0 - -2 11488 11419 11279 207 138 -2.91 0 - - 99 - 0 - -3 11609 11573 11385 222 186 -4.49 0 - - 99 - - 0 +1 11701 11710 11841 138 129 -4.88 0 0 - 99 - - 0 0014 +3 11139 11178 11864 723 684 11.30 99 - - 99 - - - 0015 -3 11876 11867 11691 183 174 4.83 99 - - - - - 99 -1 12141 12111 11908 231 201 1.45 0 - 99 - 0 - - -2 12268 12145 11987 279 156 4.77 0 - 99 - 0 0 - 0016 +2 11804 11894 12292 486 396 8.88 99 - 99 - - - - 0017 +2 12329 12353 12589 258 234 -1.95 99 - 99 - - - - 0018 +1 12460 12469 12594 132 123 -8.70 99 99 - - - - - +2 12647 12737 12904 255 165 -1.80 0 0 0 - 99 - - -2 12955 12931 12782 171 147 -3.17 0 0 - - 99 0 - +1 12712 13207 13371 657 162 0.39 0 0 - - 99 - - +2 13343 13397 13567 222 168 -3.68 0 0 0 - 99 - - 0019 -1 13674 13647 12682 990 963 10.70 99 - - - 99 - - 0020 +1 13372 13540 13698 324 156 1.32 99 99 - - - - - +3 14076 14112 14243 165 129 -5.23 0 - 0 0 - 99 - -1 14304 14301 14146 156 153 -16.35 0 - 0 - 0 99 - 0021 +2 13568 13577 14500 930 921 -2.72 0 - 0 - - 99 - -3 14552 14528 14379 171 147 -7.60 0 - - - - 99 0 -1 14907 14841 14719 186 120 -13.90 0 - 0 0 0 99 - 0022 -2 14932 14920 13667 1263 1251 5.50 99 - - - - 99 - +2 14501 14702 14992 489 288 -5.55 0 - 0 99 - - - -1 15363 15285 15106 255 177 -7.40 0 0 - 0 0 - 99 +1 14983 15121 15444 459 321 -0.34 0 0 - 0 - - 99 0023 +3 14706 14724 15545 837 819 -1.27 0 - - 0 - - 99 +1 15445 15529 15699 252 168 1.94 0 0 - - - - 99 +3 15546 15756 15893 345 135 -8.36 0 - - 0 - - 99 +1 15778 15784 16032 252 246 1.18 0 0 - - - - 99 0024 -3 16109 16106 14958 1149 1146 5.61 99 - - - - - 99 0025 -1 16398 16353 16141 255 210 1.34 99 - - - 99 - - -1 16893 16800 16477 414 321 0.24 0 - 99 - 0 0 - -2 16972 16858 16466 504 390 3.63 0 - 99 - - 0 - 0026 +2 16181 16199 16981 798 780 12.92 99 - 99 - - - - 0027 -3 17276 17249 17085 189 162 6.76 99 - - - - - 99 +2 17189 17216 17359 168 141 -4.21 0 99 0 - 0 - - -3 17534 17420 17277 255 141 -2.33 0 99 - - 0 - 0 +3 17460 17469 17669 207 198 -12.05 0 99 - 0 0 - - -2 17833 17683 17504 327 177 -16.58 0 99 - - 0 0 - +3 17697 17763 17891 192 126 -5.65 0 99 - 0 0 - - -3 18062 17969 17823 237 144 1.37 0 99 - - 0 - 0 0028 -1 18237 18153 17155 1080 996 -3.65 0 99 - - 0 - - -3 18494 18395 18270 222 123 2.28 0 99 - - - - 0 -1 18861 18774 18568 291 204 -0.19 0 99 0 - 0 - - +2 18557 18767 18889 330 120 -3.02 0 99 0 - - - - -3 18956 18929 18795 159 132 -1.06 0 99 - - - - 0 -2 19138 19123 18992 144 129 -11.02 0 99 - - - 0 - 0029 +1 17128 17185 19377 2247 2190 10.79 99 99 - - - - - 0030 +3 19455 19500 19679 222 177 -3.51 99 - - 99 - - - 0031 -3 19730 19682 19557 171 123 -0.39 27 7 65 - - - 27 0032 +1 19561 19600 19773 210 171 2.72 99 99 - - - - - +3 20019 20142 20396 375 252 5.78 0 - - 0 - - 99 0033 -3 20423 20417 19770 651 645 8.68 99 - - - - - 99 +3 20406 20565 20729 321 162 -2.75 0 - - 0 - - 99 +1 20680 20797 20952 270 153 1.37 0 0 - - - - 99 0034 -3 21143 21143 20502 639 639 8.24 99 - - - - - 99