Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIC010000381.5934.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIC010000381.5934.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_WCIC010000381.5934.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIC010000381.5934.AOI_01 Sequence length = 12744 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -1 285 285 151 132 132 -8.09 99 - - - 99 - - 0002 -3 416 392 156 258 234 -3.24 99 - - - - - 99 +2 476 599 757 279 156 5.45 0 - 0 0 - 99 - +3 603 633 836 231 201 0.09 0 - - 0 - 99 - 0003 -2 940 850 452 486 396 12.00 99 - - - - 99 - -3 1043 1034 903 138 129 -5.65 0 0 - - 99 - 0 0004 +1 868 877 1053 183 174 3.91 99 99 - - - - - +1 1135 1171 1359 222 186 -3.76 0 0 - - 99 - - +3 1311 1332 1454 141 120 -8.45 0 - 0 0 99 - - +2 1256 1325 1465 207 138 -3.85 0 - 0 - 99 - - 0005 -1 1605 1566 880 723 684 10.58 99 - - - 99 - - +3 1653 1665 1793 138 126 -4.52 0 - 0 0 - 99 - +2 1583 1649 2080 495 429 0.96 0 - 0 - - 99 - +3 2070 2073 2195 123 120 0.44 0 - - 0 - 99 - +1 2461 2503 2634 171 129 -5.33 0 0 - - - 99 0 -3 2663 2588 2442 219 144 -2.96 0 - - - - 99 0 0006 -2 2749 2695 1589 1158 1104 8.00 99 - - - - 99 - +1 2779 2794 2925 144 129 1.68 0 0 - 0 - - 99 0007 +3 2763 2766 3035 270 267 -1.21 99 - - 99 - - - -2 3079 3064 2897 180 165 -11.18 0 - - - - 0 99 +3 3036 3213 3350 312 135 -1.74 0 0 - 0 - - 99 +1 3130 3274 3444 312 168 -0.88 0 0 - - - - 99 +3 3456 3501 3641 183 138 0.81 0 - - 0 - - 99 0008 -3 3761 3749 2775 984 972 12.13 99 - - - - - 99 +3 3774 3783 3941 165 156 -4.45 0 - - 0 - 99 - +3 4095 4098 4253 156 153 -7.88 0 0 0 0 - 99 - +2 3953 4142 4312 357 168 -2.74 0 0 0 - - 99 - +3 4272 4290 4421 147 129 -10.98 0 - - 0 - 99 - +2 4340 4436 4705 363 267 -1.50 0 - 0 - - 99 - 0009 -2 4831 4825 3746 1083 1077 11.26 99 - - - - 99 - +3 4644 4650 4835 189 183 -3.01 0 - - 0 - 99 - +1 4666 4783 4944 276 159 -12.31 0 0 99 - - - - 0010 +2 4706 4733 5068 360 333 -1.13 99 - 99 - - - - +3 4965 5007 5165 198 156 -1.57 0 - - 0 - 99 - +1 5260 5272 5403 141 129 -10.71 0 0 0 - - 99 - 0011 -2 5500 5479 4838 660 639 11.32 99 - - - - 99 - 0012 +3 5376 5448 5606 228 156 4.00 99 - - 99 - - - 0013 -3 5765 5729 5598 165 129 -4.89 90 - - - - 9 90 -1 5901 5880 5689 210 189 -0.34 0 99 - - 0 - - +2 5834 5933 6088 252 153 -7.86 0 99 0 - - 0 - -3 6200 6137 6009 189 126 -0.56 3 23 - 0 73 - 3 +3 6141 6192 6314 171 120 -7.40 0 99 - 0 - 0 - -3 6470 6455 6318 150 135 -0.27 0 99 - - 0 - 0 -1 6609 6465 6262 345 201 2.23 0 99 - - 0 - - -3 6680 6674 6471 207 201 2.39 4 95 - - - - 4 -3 6893 6845 6702 189 141 4.77 2 97 - - 0 - 2 0014 +1 5617 5629 6975 1356 1344 6.39 99 99 - - - - - 0015 -1 7074 6999 6610 462 387 -1.13 99 - - - 99 - - +2 7079 7142 7294 213 150 -3.83 0 - 0 - 99 - - 0016 -1 7338 7320 7075 261 243 4.20 99 - - - 99 - - 0017 +3 7449 7449 7583 132 132 4.59 63 36 - 63 - - - 0018 +1 7441 7453 7599 156 144 2.30 99 99 - - - - - +3 7593 7593 7769 174 174 2.13 0 - 0 0 - 99 - +2 7568 7640 7813 243 171 -0.99 0 - 0 - - 99 - +3 7770 7773 7895 123 120 5.30 0 - - 0 - 99 - +2 8174 8198 8347 171 147 -1.87 0 - 0 - - 99 - +1 8287 8305 8457 168 150 -7.93 0 0 - - - 99 - +2 8351 8354 8479 126 123 0.20 0 - 0 0 - 99 - +3 8316 8412 8534 216 120 1.18 0 - - 0 - 99 0 -1 8658 8634 8476 180 156 -6.11 0 - 0 - 0 99 - +2 8480 8552 8725 243 171 -1.17 0 - 0 - - 99 - +3 8625 8682 8825 198 141 1.44 0 - - 0 - 99 - +3 8847 8853 9038 189 183 -1.02 0 - 0 0 - 99 - +2 8777 8840 9070 291 228 3.05 0 - 0 - - 99 - +3 9039 9192 9323 282 129 2.32 0 - - 0 - 99 - +2 9413 9428 9553 138 123 -1.30 0 - 0 0 - 99 - +3 9423 9423 9566 141 141 -1.08 0 - - 0 - 99 - -1 9582 9570 9436 144 132 -6.67 0 - - - 0 99 - +3 9678 9756 9902 222 144 -1.57 0 - - 0 - 99 - -3 10100 10058 9918 180 138 -5.71 0 - - - - 99 0 -3 10466 10457 10293 171 162 -10.35 0 - - - 0 99 0 +2 10325 10337 10489 162 150 1.21 0 - 0 - 0 99 - -1 10503 10503 10180 321 321 -1.15 0 - - - 0 99 - -3 10751 10742 10617 132 123 -5.86 0 - - - - 99 0 +3 10656 10668 10808 150 138 -0.84 0 - - 0 - 99 - +3 11088 11088 11216 126 126 -1.60 0 - - 0 - 99 - -1 11343 11283 11158 183 123 -7.83 0 - 0 - 0 99 - 0019 -2 11521 11518 7586 3933 3930 10.65 99 - - - - 99 - +2 12281 12362 12520 237 156 -0.15 0 - 0 - - 99 - 0020 -2 12742 12724 11654 1086 1068 9.70 99 - - - - 99 -