Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_UFTE010000061.7400.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_UFTE010000061.7400.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_UFTE010000061.7400.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_UFTE010000061.7400.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 111 210 335 222 123 1.65 0 - - 0 - 99 - +3 543 636 782 237 144 1.12 0 - 0 0 - 99 - -3 908 842 714 192 126 -3.86 0 - 0 - - 99 0 +1 772 922 1101 327 177 -14.55 0 0 0 - - 99 - -3 1145 1136 936 207 198 -10.66 0 - 0 - - 99 0 +3 1071 1185 1328 255 141 -2.96 0 - 0 0 - 99 - -1 1416 1389 1246 168 141 -5.79 0 - 7 - 0 92 - 0001 +2 368 452 1450 1080 996 -2.59 0 - 0 - - 99 - 0002 +3 1329 1356 1520 189 162 4.93 99 - - 99 - - - +2 1712 2003 2176 462 171 -4.04 0 77 0 - 22 - - +1 1633 1906 2241 606 333 4.54 0 0 - - 99 - - 0003 -1 2424 2406 1624 798 780 7.10 99 - - - 99 - - 0004 +2 2207 2297 2464 255 165 0.84 99 - 99 - - - - -2 2827 2758 2573 252 183 1.56 2 - - 97 - 2 - -3 3059 2849 2712 345 135 -5.47 0 - - 99 - - 0 -2 3160 3076 2906 252 168 2.62 0 - - 99 - 0 - -2 3622 3484 3161 459 321 -2.13 0 - - 99 - 0 0 0005 +3 2496 2499 3647 1149 1146 5.60 99 - - 99 - - - +2 3698 3764 3886 186 120 -13.01 0 99 0 - 0 - 0 0006 -3 3899 3881 3060 837 819 -0.93 0 - - 99 - - 0 -3 4034 4031 3900 132 129 0.20 7 92 - 0 0 0 7 -1 4104 3903 3613 489 288 -3.92 0 - - - 0 - 99 +3 4053 4077 4226 171 147 -6.64 0 99 - 0 - - - +2 4301 4304 4459 156 153 -14.91 0 99 0 - 0 - - -3 4529 4493 4362 165 129 -4.43 0 99 - - 0 - 0 +3 4542 4545 4706 162 159 -3.52 0 99 - 0 0 - - 0007 +1 3673 3679 4938 1263 1257 5.27 99 99 - - - - - 0008 -1 5037 5028 4105 930 921 -1.78 0 99 - - 0 - - 0009 -2 5233 5233 4907 324 324 1.34 99 - - - - 99 - -1 5262 5208 5038 222 168 -3.23 0 - 99 - 0 0 - +1 5650 5674 5823 171 147 -2.20 0 0 99 - - 0 - -2 5893 5398 5234 657 162 1.58 0 - 99 - - 0 - 0010 +2 4931 4958 5923 990 963 9.95 99 - 99 - - - - -1 5958 5868 5701 255 165 -0.48 0 - 99 - 0 0 - 0011 -2 6145 6136 6011 132 123 -9.09 99 - - - - 99 - 0012 -1 6291 6204 6016 273 186 -6.01 99 - - - 99 - - 0013 +1 6127 6139 6303 174 162 -1.88 25 25 74 - - - - 0014 +2 6122 6215 6343 219 126 -2.55 99 - 99 - - - - -3 6653 6536 6372 279 162 -3.08 0 - - 99 - - 0 0015 +3 6288 6294 6698 408 402 3.82 99 - - 99 - - - -3 6929 6929 6771 156 156 -2.99 0 - 99 - - - 0 0016 +2 6650 6686 7036 384 348 2.05 99 - 99 - 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- - - 99 +2 10859 10901 11032 171 129 -5.30 0 - 0 - 0 - 99 -1 11061 10986 10840 219 144 -3.47 0 - - - 0 - 99 0021 -3 11147 11144 9987 1158 1155 7.44 99 - - - - - 99 +2 11177 11192 11323 144 129 1.65 0 0 0 - 99 - - 0022 +1 11161 11164 11433 270 267 -1.06 99 99 - - - - - -3 11477 11462 11295 180 165 -10.41 0 - - - 99 - 0 +1 11434 11611 11748 312 135 0.26 0 0 0 - 99 - - +2 11528 11666 11842 312 174 0.60 0 - 0 - 99 - - +1 11854 11899 12039 183 138 2.01 0 0 - - 99 - - 0023 -1 12159 12147 11173 984 972 12.21 99 - - - 99 - - +1 12172 12181 12339 165 156 -3.69 0 0 - - - - 99 +1 12493 12496 12651 156 153 -7.84 0 0 0 0 - - 99 +3 12351 12390 12710 357 318 -0.81 0 - - 0 - - 99 +1 12670 12688 12819 147 129 -10.52 0 0 - - - - 99 +3 12738 12834 13103 363 267 -1.74 0 - - 0 - - 99 0024 -3 13229 13223 12144 1083 1077 11.26 99 - - - - - 99 +1 13042 13048 13233 189 183 -3.11 0 0 - - - - 99 +2 13064 13181 13342 276 159 -11.93 0 - 0 99 - - - 0025 +3 13104 13227 13466 360 237 -2.47 99 - - 99 - - - +1 13363 13405 13563 198 156 -0.88 0 0 - - - - 99 +2 13658 13670 13801 141 129 -10.87 0 - 0 0 - - 99 0026 -3 13898 13877 13236 660 639 10.91 99 - - - - - 99 0027 +1 13774 13798 14004 228 204 2.95 99 99 - - - - - 0028 -1 14163 14127 13996 165 129 -5.38 75 - - - 75 - 24 -2 14299 14278 14087 210 189 -0.02 0 - 99 - - 0 - +3 14232 14331 14486 252 153 -5.92 0 - 99 0 - - 0 -1 14598 14550 14407 189 141 -2.51 0 - 62 - 0 37 - +1 14539 14590 14712 171 120 -8.25 0 0 99 - - - 0 -1 14868 14853 14716 150 135 -0.81 0 - 99 - 0 0 - -2 15007 14863 14660 345 201 1.92 0 - 99 - - 0 - -1 15078 15072 14869 207 201 1.70 0 - 99 - 0 - - -1 15291 15243 15100 189 141 4.85 0 - 99 - 0 0 - 0029 +2 14015 14027 15373 1356 1344 7.29 99 - 99 - - - - 0030 -2 15472 15397 15008 462 387 -0.59 99 - - - - 99 - +3 15477 15540 15692 213 150 -3.91 0 - - 0 - 99 - 0031 -2 15736 15727 15473 261 252 4.31 99 - - - - 99 - 0032 +1 15847 15847 15981 132 132 4.38 73 73 26 - - - - 0033 +2 15839 15851 15997 156 144 1.96 99 - 99 - - - - +1 15991 15991 16167 174 174 2.62 0 0 - 0 - - 99 +3 15966 16038 16211 243 171 -0.66 0 - 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99 +1 19054 19066 19206 150 138 -0.66 0 0 - - - - 99 +1 19486 19486 19614 126 126 -1.27 0 0 - - - - 99 -2 19741 19681 19556 183 123 -6.38 0 - - 0 - 0 99 0034 -3 19919 19916 15984 3933 3930 10.55 99 - - - - - 99 +3 20679 20760 20918 237 156 -0.07 0 - - 0 - - 99 0035 -3 21143 21122 20052 1089 1068 6.14 99 - - - - - 99