Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_RWIA010001161.5522.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_RWIA010001161.5522.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_RWIA010001161.5522.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_RWIA010001161.5522.AOI_01 Sequence length = 7066 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 1228 1183 1025 201 156 9.06 0 - - 99 - 0 - 0001 +3 3 159 1481 1476 1320 17.32 99 - - 99 - - - -2 1519 1405 1262 255 141 4.20 0 - - 99 - 0 - 0002 -1 1662 1656 1486 174 168 11.33 99 - - - 99 - - +1 1750 1765 1935 183 168 4.24 0 0 - 99 - - - -2 2047 2026 1835 210 189 7.05 0 - - 99 - 0 - 0003 +3 1524 1602 2201 675 597 15.43 99 - - 99 - - - -3 2915 2861 2700 213 159 -1.64 0 99 - - - - 0 -3 3257 3221 3093 162 126 4.69 0 99 - - - - 0 0004 +1 2152 2185 3714 1560 1527 16.35 99 99 - - - - - -3 3716 3671 3546 168 123 2.90 0 99 - - - - 0 0005 +3 3681 3771 3944 261 171 3.97 99 - - 99 - - - 0006 +1 3850 3883 4074 222 189 3.25 99 99 - - - - - -3 4172 4034 3903 267 129 0.53 7 92 - - - - 7 +3 4023 4071 4217 192 144 -4.47 0 0 - 0 - 99 - +1 4075 4111 4260 183 147 -4.49 0 0 - - - 99 - -3 4349 4334 4173 174 159 -5.96 0 - - - 99 0 0 0007 -2 4381 4309 3950 429 357 -2.85 99 - - - - 99 - -3 4484 4475 4350 132 123 -7.67 0 0 - - 99 - 0 +1 4261 4282 4533 270 249 -7.74 0 0 - - 99 - - +2 4391 4490 4630 237 138 -10.98 0 - 0 - 99 - - +1 4534 4615 4767 231 150 -12.67 0 0 - 0 99 - - +3 4614 4623 4775 159 150 -14.19 0 - - 0 99 - - 0008 -1 5055 4947 4132 921 813 4.48 99 - - - 99 - - 0009 +1 4813 4927 5094 279 165 -7.95 55 55 - 44 - - - +2 4940 5096 5263 321 165 -10.48 0 - 0 0 - - 99 +3 4881 5127 5267 384 138 -12.87 0 - - 0 - - 99 +1 5194 5260 5415 219 153 -6.22 0 0 - - - - 99 +3 5268 5286 5528 258 240 -3.97 0 - - 0 - - 99 0010 -3 5624 5612 5007 615 603 7.25 99 - - - - - 99 +1 5416 5473 5628 210 153 -3.28 0 0 - - - 0 99 -2 5635 5533 5408 225 123 -4.38 0 - - - - 0 99 0011 -2 5911 5815 5690 219 123 -1.77 55 - 44 - 0 55 - +3 5742 5778 5942 198 162 -4.71 0 - 99 0 0 - - -1 6015 5847 5644 369 201 -4.39 0 - 99 - 0 - - 0012 +2 5648 5696 6061 411 363 3.00 99 - 99 - - - - -3 6182 6143 6000 180 141 2.22 0 99 - - - - 0 +2 6062 6083 6238 174 153 -0.00 0 99 0 - - - - -3 6329 6308 6183 144 123 -2.97 0 99 - - 0 - 0 -1 6339 6282 6136 201 144 1.95 0 99 - - 0 - - 0013 +1 5938 5950 6351 411 399 13.44 99 99 - - - - - 0014 -3 6494 6494 6330 162 162 4.42 99 - - - - - 99 -1 6606 6600 6478 126 120 -7.16 0 - - 99 0 - - 0015 +3 6339 6357 6671 330 312 6.47 99 - - 99 - - - 0016 +2 6656 6665 6847 189 180 0.65 99 - 99 - - - -