Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000351.771.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000351.771.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000351.771.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSQV010000351.771.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 463 421 224 237 195 -0.64 0 - 99 - - 0 - 0001 +2 2 20 1090 1086 1068 10.05 99 - 99 - - - - +3 1401 1461 1586 183 123 -6.42 0 - 99 0 - 0 - -1 1656 1656 1528 126 126 -0.89 0 - 99 - 0 - - -1 2088 2076 1936 150 138 -2.21 0 - 99 - 0 - - +1 1993 2002 2127 132 123 -6.42 0 0 99 - - - - -2 2419 2407 2255 162 150 1.53 0 - 99 0 - 0 - +1 2278 2287 2451 171 162 -8.51 0 0 99 0 - - - +3 2241 2241 2564 321 321 -1.67 0 - 99 0 - - - +1 2644 2686 2826 180 138 -5.79 0 0 99 - - - - -1 3066 2988 2842 222 144 -0.68 0 - 99 - 0 - - +3 3162 3174 3308 144 132 -7.43 0 - 99 0 - - - -1 3321 3321 3178 141 141 -0.16 0 - 99 - 0 - - -2 3331 3316 3191 138 123 -0.44 0 - 99 - 0 0 - -1 3705 3543 3421 282 120 1.44 0 - 99 - 0 - - -1 3897 3891 3706 189 183 0.80 0 - 99 - 0 0 - -2 3967 3904 3674 291 228 2.90 0 - 99 - - 0 - -1 4119 4104 3919 198 183 0.20 0 - 99 - 0 - - -2 4264 4192 4019 243 171 -0.52 0 - 99 - - 0 - +3 4086 4110 4268 180 156 -6.94 0 - 99 0 - 0 - -2 4393 4390 4265 126 123 0.09 0 - 99 - 0 0 - -1 4428 4332 4210 216 120 1.75 0 0 99 - 0 - - -3 4457 4439 4287 168 150 -8.88 0 - 99 - - - 0 -2 4570 4546 4397 171 147 -2.02 0 - 99 - - 0 - -1 4974 4971 4849 123 120 6.28 0 - 99 - 0 - - -1 5151 5097 4975 174 120 2.21 0 - 99 - 0 0 - 0002 +2 1223 1226 5158 3933 3930 10.63 99 - 99 - - - - -2 5176 5104 4931 243 171 -2.42 0 - 99 - - 0 - 0003 -1 5295 5295 5161 132 132 5.97 99 - - - 99 - - -2 5665 5602 5450 213 150 -3.34 0 - - 99 - 0 - 0004 +3 5406 5415 5669 261 252 5.92 99 - - 99 - - - 0005 -1 5784 5775 5599 183 174 -0.29 99 - - - 99 - - +1 5851 5899 6042 189 141 3.70 0 0 - 0 - - 99 0006 +3 5673 5745 6134 459 387 -1.86 99 - - 99 - - - +1 6064 6070 6273 207 201 1.19 0 0 - - - - 99 +1 6274 6289 6426 150 135 -2.40 0 0 - 0 - - 99 +3 6135 6279 6482 345 201 -0.08 0 - - 0 - - 99 -1 6603 6552 6430 171 120 -6.33 0 - 0 - 0 - 99 +1 6544 6607 6735 189 126 -1.99 0 0 - 1 - - 98 -2 6910 6811 6656 252 153 -7.60 0 - 0 - - 0 99 +3 6843 6864 7055 210 189 -1.64 0 - - 0 - - 99 0007 -3 7127 7115 5769 1356 1344 8.36 99 - - - - - 99 0008 +1 6979 7015 7146 165 129 -5.96 35 35 64 - - - - 0009 -1 7368 7344 7138 228 204 4.25 99 - - - 99 - - -3 7484 7472 7341 141 129 -9.87 0 - 99 - - 0 0 -1 7779 7737 7579 198 156 -0.12 0 - 99 - 0 - - 0010 +2 7244 7265 7906 660 639 11.40 99 - 99 - - - - 0011 -2 8038 7915 7676 360 237 -1.09 99 - - - - 99 - -3 8078 7961 7800 276 159 -12.67 0 - - - - 99 0 -1 8100 8031 7909 189 120 -3.60 0 - 99 - 0 0 0 -2 8404 8308 8039 363 267 -2.14 0 - 99 - - 0 - -1 8472 8454 8323 147 129 -10.76 0 - 99 - 0 - - -1 8649 8646 8491 156 153 -8.83 0 - 99 - 0 0 0 -2 8791 8602 8432 357 168 -2.88 0 - 99 - - 0 0 -1 8970 8961 8803 165 156 -4.76 0 - 99 - 0 - - 0012 +2 7913 7919 8998 1083 1077 11.12 99 - 99 - - - - -1 9288 9243 9103 183 138 0.09 0 99 - - 0 - - -3 9614 9476 9300 312 174 0.20 0 99 - - - - 0 -1 9708 9531 9394 312 135 0.71 0 99 - - 0 - 0 +2 9665 9680 9847 180 165 -11.94 0 99 0 - - - - -3 9965 9950 9819 144 129 2.43 0 99 - - 0 - 0 0013 +1 8983 8995 9969 984 972 12.29 99 99 - - - - - 0014 -1 9981 9978 9709 270 267 -1.19 99 - - - 99 - - -3 10283 10241 10110 171 129 -5.24 0 0 99 - - - 0 +1 10081 10156 10302 219 144 -4.19 0 0 99 - - - - -1 10674 10671 10549 123 120 0.76 0 - 99 - 0 - - -1 11091 11073 10951 138 120 -5.41 0 - 99 - 0 0 - 0015 +2 9995 9998 11155 1158 1155 11.55 99 - 99 - - - - -2 11161 11095 10766 393 327 3.27 0 - 99 - - 0 - -1 11433 11412 11290 141 120 -8.25 0 - - 99 0 0 - -2 11488 11419 11279 207 138 -3.15 0 - - 99 - 0 - -3 11609 11573 11385 222 186 -4.67 0 - - 99 - - 0 +1 11701 11710 11841 138 129 -5.71 0 0 - 99 - - 0 0016 +3 11139 11178 11864 723 684 11.12 99 - - 99 - - - 0017 -3 11876 11867 11691 183 174 4.19 99 - - - - - 99 -1 12141 12111 11908 231 201 2.04 0 - 99 - 0 - - -2 12268 12145 11945 321 198 3.98 0 - 99 - 0 0 - 0018 +2 11804 11894 12292 486 396 12.40 99 - 99 - - - - 0019 +3 12459 12459 12593 132 132 -7.04 99 - - 99 - - - -1 12954 12930 12781 171 147 -2.75 0 - - 0 0 - 99 +3 12711 13206 13370 657 162 -0.22 0 - - 0 - - 99 +1 13342 13396 13566 222 168 -3.02 0 0 - 0 - - 99 0020 -3 13673 13646 12681 990 963 10.93 99 - - - - - 99 0021 +3 13371 13431 13697 324 264 0.91 99 - - 99 - - - +2 14075 14111 14242 165 129 -7.90 0 0 0 - 99 - - -3 14303 14300 14145 156 153 -13.97 0 0 - - 99 - 0 0022 +1 13567 13576 14499 930 921 -2.86 0 0 - - 99 - - -2 14551 14506 14378 171 126 -6.81 0 - - - 99 0 - -3 14906 14867 14745 159 120 -15.56 0 0 1 - 98 - 0 0023 -1 14931 14925 13666 1263 1257 4.64 99 - - - 99 - - +3 14982 15120 15443 459 321 -2.06 0 - 0 0 - 99 - 0024 +2 14570 14573 15544 972 969 -1.29 0 - 0 - - 99 - +3 15444 15528 15698 252 168 3.09 0 - - 0 - 99 - +2 15545 15755 15892 345 135 -7.73 0 - 0 - - 99 - +3 15777 15846 16031 252 183 1.20 2 - - 2 - 97 - 0025 -2 16108 16105 14957 1149 1146 5.30 99 - - - - 99 - 0026 -3 16397 16352 16140 255 210 0.86 99 - - - - - 99 -3 16892 16601 16428 462 171 -3.83 0 95 - - 4 - 0 -1 16971 16698 16363 606 333 4.19 0 99 - - 0 - - 0027 +1 16180 16198 16980 798 780 8.45 99 99 - - - - - 0028 -2 17275 17248 17084 189 162 6.01 99 - - - - 99 - +1 17188 17215 17358 168 141 -4.52 0 0 - 99 - - 0 -2 17533 17419 17276 255 141 -3.26 0 - - 99 - 0 0 +2 17459 17468 17668 207 198 -10.77 0 - 0 99 - - 0 -1 17832 17682 17503 327 177 -15.95 0 - - 99 0 - 0 +2 17696 17762 17890 192 126 -5.12 0 - 0 99 - - 0 -2 18061 17968 17822 237 144 2.43 0 - - 99 - 0 0 0029 -3 18236 18152 17154 1080 996 -3.88 0 - - 99 - - 0 -2 18493 18394 18269 222 123 2.88 0 - - 99 - 0 - -3 18860 18773 18567 291 204 -1.03 0 0 - 99 - - 0 +1 18556 18766 18888 330 120 -1.89 0 0 - 99 - - - -2 18955 18928 18794 159 132 -1.07 0 - - 99 - 0 - -1 19137 19122 18991 144 129 -10.37 0 - - 99 0 - - 0030 +3 17127 17184 19376 2247 2190 10.91 99 - - 99 - - - 0031 +2 19454 19499 19678 222 177 -2.84 99 - 99 - - - - -2 19729 19681 19556 171 123 -0.96 6 89 - 4 - 6 - 0032 +3 19560 19599 19772 210 171 2.86 99 - - 99 - - - +2 20018 20141 20395 375 252 5.10 0 - 0 - - 99 - 0033 -2 20422 20374 19769 651 603 9.34 99 - - - - 99 - +2 20405 20564 20728 321 162 -2.38 0 - 0 - - 99 - +3 20679 20796 20951 270 153 1.28 0 - - 0 - 99 - 0034 -2 21142 21142 20501 639 639 8.51 99 - - - - 99 -