Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000121.774.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000121.774.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSQV010000121.774.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSQV010000121.774.AOI_01 Sequence length = 11618 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 3 6 131 126 123 7.58 99 - - 99 - - - 0002 +2 59 71 199 138 126 3.87 99 - 99 - - - - -2 526 472 311 213 159 4.81 0 - - - - 0 99 0003 -3 1646 1619 144 1500 1473 13.98 99 - - - - - 99 +3 1797 1842 2066 267 222 5.61 0 - - 0 99 - - +2 2600 2750 2884 282 132 7.69 0 - 0 - 99 - - 0004 -1 3261 3207 1741 1518 1464 14.97 99 - - - 99 - - 0005 -3 3431 3431 3309 120 120 10.12 99 - - - - - 99 0006 -3 3614 3590 3453 159 135 9.69 99 - - - - - 99 0007 +3 3483 3483 3626 141 141 1.61 99 - - 99 - - - 0008 -3 3941 3920 3669 270 249 4.08 99 - - - - - 99 0009 +2 3923 3923 4045 120 120 4.49 62 - 62 - 37 - - 0010 -1 4086 4083 3877 207 204 1.39 99 - - - 99 - - -1 4359 4257 4135 222 120 -3.35 0 - 0 - 0 99 - +2 4046 4256 4390 342 132 -11.12 0 - 0 - - 99 - +3 4512 4536 4673 159 135 -7.56 0 - 0 0 - 99 - +2 4484 4628 4753 267 123 -0.31 0 - 0 - - 99 - 0011 -2 4882 4861 3929 951 930 7.87 99 - - - - 99 - 0012 +2 4790 4853 4984 192 129 -3.92 99 - 99 - - - - +3 4908 4923 5099 189 174 -5.02 0 - - 0 - - 99 +3 5100 5229 5363 261 132 0.70 0 - - 0 - - 99 +2 5591 5600 5725 132 123 2.68 0 - 0 - - - 99 -1 6171 6153 5992 177 159 0.89 0 0 - - 0 - 99 +3 6096 6120 6269 171 147 -2.70 0 0 - 0 - - 99 +1 5785 5914 6306 519 390 0.95 0 0 - - - - 99 0013 -3 6710 6710 4863 1845 1845 10.34 99 - - - - - 99 +1 6538 6541 6720 180 177 2.38 1 1 - 98 - - - 0014 +3 6294 6510 6734 438 222 3.79 99 - - 99 - - - +1 6721 6967 7110 387 141 1.12 0 0 0 - - - 99 +2 6962 7007 7153 189 144 -3.53 0 - 0 - - - 99 -1 7170 7170 7045 123 123 -5.94 0 - - - 0 - 99 +2 7193 7241 7387 192 144 -7.49 0 - 0 0 - - 99 +3 7086 7302 7448 360 144 0.61 0 - - 0 - - 99 +3 7449 7476 7604 153 126 4.91 0 - - 0 - 0 99 -2 7621 7615 7472 147 141 -1.89 0 - - - - 0 99 +3 7917 7926 8084 165 156 4.40 0 - - 0 - - 99 0015 -3 8105 8075 6759 1344 1314 10.46 99 - - - - - 99 -3 8543 8543 8379 162 162 0.81 0 - 99 - - - 0 -3 8771 8762 8622 147 138 -0.87 0 - 99 - 0 - 0 -1 8784 8694 8485 297 207 1.42 0 - 99 - 0 - - -1 9117 9093 8971 144 120 -2.86 0 - 99 - 0 0 - -2 9136 9070 8648 486 420 0.62 0 - 99 - - 0 - 0016 +2 8318 8321 9304 984 981 7.30 99 - 99 - - - - 0017 +1 9046 9169 9309 261 138 -1.88 42 42 - - 57 - - 0018 -2 9475 9448 9245 228 201 3.21 99 - - - - 99 - +1 9727 9739 9903 174 162 2.10 2 2 97 - - - - 0019 -1 10194 10185 10060 132 123 1.63 48 - 51 - 48 - - -3 10412 10388 10260 150 126 0.14 0 - 99 - - 0 0 -2 10447 10420 10256 189 162 -1.26 0 - 99 - - 0 - -1 10515 10488 10303 210 183 1.73 0 - 99 - 0 - - +1 10393 10399 10539 144 138 -1.00 0 0 99 - - - - +3 10932 10965 11087 153 120 -2.42 0 - 99 0 - 0 - -2 11131 10954 10832 297 120 3.87 0 - 99 - - 0 - -3 11153 11132 11010 141 120 -3.13 0 - 99 - - 0 0 0020 +2 9458 9467 11515 2055 2046 7.02 99 - 99 - - - - -2 11545 11512 11330 213 180 0.65 0 - 99 - - 0 - 0021 -1 11586 11556 11422 162 132 -1.63 99 - - - 99 - -