Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000601.936.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000601.936.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000601.936.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSPP010000601.936.AOI_01 Sequence length = 12448 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 179 302 502 321 198 4.68 0 - 0 0 - 99 - +3 306 336 539 231 201 0.99 0 - - 0 - 99 - 0001 -2 643 553 155 486 396 11.83 99 - - - - 99 - -3 746 737 606 138 129 -5.27 0 0 - - 99 - 0 0002 +1 571 580 756 183 174 4.08 99 99 - - - - - +1 838 874 1062 222 186 -3.56 0 0 - - 99 - - +3 1014 1035 1157 141 120 -6.84 0 - 0 0 99 - - +2 959 1028 1168 207 138 -4.00 0 - 0 - 99 - - 0003 -1 1308 1269 583 723 684 10.45 99 - - - 99 - - +3 1356 1368 1496 138 126 -4.56 0 - 0 0 - 99 - +2 1286 1352 1783 495 429 0.76 0 - 0 - - 99 - +3 1773 1776 1898 123 120 0.46 0 - - 0 - 99 - +1 2164 2206 2337 171 129 -5.48 0 0 - - - 99 0 -3 2366 2291 2145 219 144 -2.89 0 - - - - 99 0 0004 -2 2452 2398 1292 1158 1104 7.99 99 - - - - 99 - +1 2482 2497 2628 144 129 2.95 0 0 - 0 - - 99 0005 +3 2466 2469 2738 270 267 -0.83 99 - - 99 - - - -2 2782 2767 2600 180 165 -10.71 0 - - - - 0 99 +3 2739 2916 3053 312 135 -0.23 0 0 - 0 - - 99 +1 2833 2971 3147 312 174 -0.04 0 0 - - - - 99 +3 3159 3174 3344 183 168 1.42 0 - - 0 - - 99 0006 -3 3464 3452 2478 984 972 12.10 99 - - - - - 99 +3 3477 3486 3644 165 156 -5.11 0 - - 0 - 99 - +3 3798 3801 3956 156 153 -8.77 0 0 0 0 - 99 - +2 3656 3845 4015 357 168 -2.60 0 0 0 - - 99 - +3 3975 3993 4124 147 129 -10.19 0 - - 0 - 99 - +2 4043 4139 4408 363 267 -1.40 0 - 0 - - 99 - 0007 -2 4534 4528 3449 1083 1077 10.89 99 - - - - 99 - +3 4347 4353 4538 189 183 -3.28 0 - - 0 - 99 - +1 4369 4486 4647 276 159 -12.20 0 0 99 - - - - 0008 +2 4409 4532 4771 360 237 -0.95 99 - 99 - - - - +3 4668 4710 4868 198 156 -2.16 0 - - 0 - 99 - +1 4963 4975 5106 141 129 -10.19 0 0 0 - - 99 - 0009 -2 5203 5182 4541 660 639 11.34 99 - - - - 99 - 0010 +3 5079 5151 5309 228 156 3.25 99 - - 99 - - - 0011 -3 5468 5432 5301 165 129 -6.05 41 - - - - 58 41 -1 5604 5583 5392 210 189 -0.23 0 99 - - 0 - - +2 5537 5636 5791 252 153 -6.64 0 99 0 - - 0 - -3 5903 5840 5712 189 126 -0.00 2 27 - - 70 - 2 +3 5844 5895 6017 171 120 -6.77 0 99 - 0 - 0 - -3 6173 6158 6021 150 135 0.15 0 99 - - 0 - 0 -1 6312 6168 5965 345 201 2.20 0 99 - - 0 - - -3 6383 6377 6174 207 201 1.52 1 98 - - - - 1 -3 6596 6548 6405 189 141 5.11 3 96 - - 0 - 3 0012 +1 5320 5332 6678 1356 1344 6.58 99 99 - - - - - 0013 -1 6774 6702 6313 459 387 -1.33 99 - - - 99 - - 0014 +3 6663 6672 6848 183 174 -1.31 99 - - 99 - - - +2 6782 6845 6997 213 150 -3.99 0 - 0 - 99 - - 0015 -1 7041 7023 6778 261 243 4.98 99 - - - 99 - - 0016 +3 7152 7152 7286 132 132 4.13 99 - - 99 - - - +3 7296 7296 7472 174 174 1.78 0 - 0 0 - 99 - +2 7271 7343 7516 243 171 -0.41 0 - 0 - - 99 - +3 7473 7476 7598 123 120 5.83 0 - - 0 - 99 - +2 7877 7901 8050 171 147 -2.44 0 - 0 - - 99 - +1 7990 8008 8160 168 150 -7.44 0 0 - - - 99 - +2 8054 8057 8182 126 123 0.57 0 - 0 0 - 99 - +3 8019 8115 8237 216 120 1.15 0 - - 0 - 99 0 -1 8361 8337 8179 180 156 -5.39 0 - 0 - 0 99 - +2 8183 8255 8428 243 171 -1.62 0 - 0 - - 99 - +3 8328 8385 8528 198 141 1.51 0 - - 0 - 99 - +3 8550 8556 8741 189 183 -0.99 0 - 0 0 - 99 - +2 8480 8543 8773 291 228 3.49 0 - 0 - - 99 - +3 8742 8895 9026 282 129 2.82 0 - - 0 - 99 - +2 9116 9131 9256 138 123 -0.06 0 - 0 0 - 99 - +3 9126 9126 9269 141 141 -0.70 0 - - 0 - 99 - -1 9285 9273 9139 144 132 -6.38 0 - - - 0 99 - +3 9381 9459 9605 222 144 -0.45 0 - - 0 - 99 - -3 9803 9761 9621 180 138 -5.57 0 - - - - 99 0 -3 10169 10160 9996 171 162 -10.37 0 - - - 0 99 0 +2 10028 10040 10192 162 150 0.75 0 - 0 - 0 99 - -1 10206 10206 9883 321 321 -1.45 0 - - - 0 99 - -3 10454 10445 10320 132 123 -4.91 0 - - - - 99 0 +3 10359 10371 10511 150 138 -1.34 0 - - 0 - 99 - +3 10791 10791 10919 126 126 -1.00 0 - - 0 - 99 - -1 11046 10986 10861 183 123 -8.28 0 - 0 - 0 99 - 0017 -2 11224 11221 7289 3933 3930 10.71 99 - - - - 99 - +2 11984 12065 12223 237 156 0.48 0 - 0 - - 99 - 0018 -2 12448 12427 11357 1089 1068 10.14 99 - - - - 99 -