Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000011.903.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000011.903.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_QSPP010000011.903.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSPP010000011.903.AOI_01 Sequence length = 20993 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 38 286 282 246 -2.73 0 - 0 0 99 - - +3 42 189 347 303 156 -5.93 0 0 - 0 99 - - +1 70 319 492 420 171 -5.28 0 0 - - 99 - - +2 407 449 604 195 153 -4.93 0 - 0 0 99 - - +1 493 532 717 222 183 -6.34 0 0 - 0 99 - - +3 348 516 833 483 315 -8.79 0 - - 0 99 - - 0001 +2 689 833 1057 366 222 4.41 99 - 99 - - - - +2 1298 1388 1549 249 159 -7.39 0 - 0 99 0 0 - 0002 -1 1566 1395 1198 366 195 1.22 99 - - - 99 - - -2 1579 1357 1235 342 120 -0.42 2 - - - 97 2 - -3 1778 1778 1653 123 123 1.73 0 - - 99 - - 0 0003 +3 1242 1254 1877 633 621 5.83 99 - - 99 - - - 0004 -3 1964 1943 1779 183 162 -3.79 99 - - - - - 99 -2 2827 2809 2588 237 219 -1.03 0 99 - - - 0 - -1 2985 2931 2713 270 216 -8.37 0 99 0 - 0 - - 0005 -2 3028 2989 2840 186 147 -1.51 24 74 1 - 0 24 - +2 2675 2900 3049 372 147 -0.57 0 99 0 - - - - -2 3268 3232 3083 183 147 -7.12 0 99 - - 0 0 0 -3 3317 3125 3000 315 123 -7.52 0 99 - - 0 - 0 +2 3224 3242 3397 171 153 -4.99 0 99 0 - - - - 0006 +1 2122 2122 3570 1446 1446 7.36 99 99 - - - - - -2 3598 3529 3371 225 156 0.74 0 99 - - - 0 - 0007 +2 3398 3413 3607 207 192 3.21 99 - 99 - - - - 0008 -1 3957 3678 3538 417 138 -2.60 99 - - - 99 - - +2 3923 3944 4120 195 174 -2.14 0 99 0 - - - - -1 4350 4296 4048 300 246 3.12 0 99 - - 0 - - -2 4510 4480 4316 192 162 -0.18 0 99 - - - 0 - -1 4668 4563 4351 315 210 3.05 0 99 - - 0 - - +2 4586 4595 4717 129 120 -7.93 0 99 0 - - - - -1 5058 4884 4669 387 213 2.00 0 99 - - 0 - - 0009 +1 3595 3604 5214 1617 1608 13.46 99 99 - - - - - -1 5610 5607 5482 126 123 -5.36 0 - 99 - 0 0 - +3 5547 5589 5714 165 123 -5.28 0 - 99 0 - 0 - -2 5779 5647 5420 357 225 3.85 0 - 99 - - 0 - -2 6190 6190 5996 192 192 2.23 0 - 99 - 0 0 - -1 6246 6009 5812 432 195 -1.45 0 - 99 - 0 - - 0010 +2 5402 5414 6319 915 903 9.01 99 - 99 - - - - 0011 -3 6596 6593 6462 132 129 7.51 21 - 78 - - - 21 -3 7376 7313 6972 402 339 4.83 0 - 99 - - - 0 -1 7875 7749 7564 309 183 0.97 0 - 99 - 0 - - 0012 +2 6320 6347 7987 1665 1638 12.71 99 - 99 - - - - 0013 -1 8010 8007 7885 123 120 3.38 99 - - - 99 - - 0014 +2 8153 8153 8293 138 138 2.04 82 - 82 - - - 17 0015 +3 8217 8259 8441 222 180 1.57 99 - - 99 - - - +2 8675 8684 8812 135 126 0.17 0 - 0 - - 99 - -1 8946 8916 8782 162 132 -6.10 0 - - 0 0 99 - +2 8813 8840 9016 201 174 -1.89 0 - 0 0 - 99 - 0016 -2 9046 8899 8279 765 618 8.71 99 - - - - 99 - 0017 -1 9111 9078 8947 162 129 -3.85 26 - - 73 26 - - 0018 +3 8766 8955 9173 405 216 -0.46 99 - - 99 - - - 0019 +2 9044 9071 9199 153 126 -5.09 99 - 99 - - - - 0020 -2 9322 9319 9170 150 147 6.51 99 - - 0 - 99 - 0021 +1 9274 9283 9405 129 120 4.37 99 99 - - - - - 0022 +2 9512 9515 9916 402 399 6.10 99 - 99 - - - - 0023 +3 9831 9831 9986 153 153 8.23 99 - - 99 - - - -2 10267 10225 10082 183 141 -1.06 0 99 - - - 0 - -1 11025 11010 10867 156 141 4.90 0 99 - - 0 - - +2 11132 11153 11332 198 177 8.65 0 99 0 - - - - 0024 +1 9907 9913 11451 1542 1536 11.78 99 99 - - - - - 0025 -3 11552 11480 11310 240 168 2.19 99 - - - - - 99 0026 -1 11580 11559 11413 165 144 9.95 99 - - - 99 - - 0027 -3 11885 11864 11682 201 180 10.79 99 0 - - - - 99 +1 11680 11704 11889 207 183 0.52 0 0 - - - - 99 +2 11816 11870 12007 189 135 1.58 0 - 0 - 99 - - 0028 -1 12042 11988 11833 207 153 4.57 99 - 0 - 99 - - 0029 -2 12448 12388 12101 345 285 7.52 99 - - - - 99 - 0030 +3 12309 12324 12458 147 132 0.80 99 - - 99 - - - +3 12603 12708 12989 384 279 1.85 0 - - 0 - - 99 +3 13191 13314 13448 255 132 -1.65 0 0 - 0 - - 99 0031 -3 13472 13463 12339 1131 1122 10.93 99 - - - - - 99 -2 13498 13486 13343 153 141 -4.70 4 - - - 95 4 - 0032 +1 13453 13456 13599 144 141 -2.14 61 61 - 38 - - - +3 13449 13560 13751 300 189 -1.66 0 - - 0 - - 99 +1 13663 13663 13893 228 228 -0.62 0 0 - - - - 99 -2 14020 13942 13793 225 147 -3.73 0 - 0 - - 0 99 +3 13878 13890 14117 237 225 -0.07 0 - - 0 - - 99 -1 14142 14097 13930 210 165 -5.57 0 - - 0 0 - 99 +1 14329 14338 14496 165 156 -1.86 0 0 - - - - 99 0033 -3 14522 14462 13473 1047 987 9.41 99 - - - - - 99 +2 14933 14984 15169 234 183 2.01 0 0 0 - 99 - - +1 14917 14929 15321 402 390 1.53 0 0 - - 99 - - 0034 -1 15381 15381 14551 828 828 10.93 99 - - - 99 - - +3 15516 15516 15728 210 210 1.11 0 - - 0 - - 99 +3 15753 15756 15989 234 231 3.53 0 - - 0 - - 99 -1 16185 16041 15889 294 150 -0.85 0 - 0 - 0 - 99 +1 16075 16093 16221 144 126 0.85 0 0 - - - - 99 +2 16427 16430 16555 126 123 -6.10 0 - 0 - - - 99 +1 16492 16498 16629 135 129 -0.66 0 0 - - - - 99 +1 16693 16714 16854 159 138 1.55 0 0 - 0 - - 99 +3 16638 16827 17147 507 318 3.07 0 - - 0 - - 99 +1 17023 17032 17178 153 144 -1.10 0 0 - - - 0 99 -2 17239 17209 17024 213 183 -4.16 0 - - - - 0 99 +1 17254 17254 17400 144 144 -2.60 0 0 - - - - 99 0035 -3 17555 17489 15378 2175 2109 9.95 99 - - - - - 99 -1 17577 17508 17356 219 150 2.99 0 - - - 0 - 99 0036 +1 17401 17401 17589 186 186 9.60 99 99 - - - - - +1 17653 17668 17799 144 129 3.00 0 0 - - - - 99 -2 17905 17884 17738 165 144 -4.04 0 - - 0 - 0 99 +1 17851 17869 18057 204 186 0.64 0 0 - - - - 99 0037 -3 18152 18125 17583 567 540 10.90 99 - - - - - 99 0038 +1 18091 18109 18285 192 174 -1.46 99 99 - 0 - - - +2 18173 18203 18364 189 159 2.42 0 - 0 - 99 - - +1 18286 18340 18552 264 210 0.13 0 0 - - 99 - - -2 18589 18583 18428 159 153 -7.59 0 - - - 99 0 - -2 18748 18724 18590 156 132 -13.13 0 - - - 99 0 - 0039 -1 18921 18903 18139 780 762 10.15 99 - - - 99 - - 0040 +1 18790 18805 18927 135 120 -1.17 99 99 - - - - - 0041 -1 19095 19089 18922 171 165 5.89 99 - - - 99 - - +1 19108 19171 19305 195 132 -3.83 0 0 0 - 99 0 - 0042 +2 19019 19019 19426 405 405 -0.24 99 - 99 - - - - -2 19486 19303 19133 351 168 -7.41 0 0 0 - 99 0 - +1 19306 19366 19524 216 156 1.99 0 0 - 0 99 - - +3 19335 19359 19529 192 168 -4.51 0 - - 0 99 - - +1 19525 19549 19743 216 192 -0.68 0 0 0 - 99 - - +2 19478 19610 19771 291 159 0.70 0 - 0 - 99 - - +2 19817 19892 20095 276 201 -0.09 0 - 0 - 99 - - -3 20108 20099 19947 159 150 -6.93 0 0 - - 99 - 0 0043 -1 20205 20178 19096 1107 1080 10.73 99 - - - 99 - - 0044 -3 20423 20420 20190 231 228 3.03 99 0 - - - - 99 +1 20161 20293 20427 264 132 1.88 10 10 - - - - 89 +1 20428 20434 20589 159 153 -1.04 0 0 - - 99 - - 0045 -1 20733 20709 20431 300 276 7.87 99 - - - 99 - -