Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_JABDSA0100000881.6532.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_JABDSA0100000881.6532.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_JABDSA0100000881.6532.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JABDSA0100000881.6532.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 463 382 224 237 156 -0.50 0 - 99 - - 0 - 0001 +2 2 20 1090 1086 1068 10.49 99 - 99 - - - - +3 1401 1461 1586 183 123 -5.81 0 - 99 0 - 0 - -1 1656 1656 1528 126 126 -1.83 0 - 99 - 0 - - -1 2088 2076 1936 150 138 -1.62 0 - 99 - 0 - - +1 1993 2002 2127 132 123 -6.96 0 0 99 - - - - -2 2419 2407 2255 162 150 0.40 0 - 99 0 - 0 - +1 2278 2287 2451 171 162 -7.78 0 0 99 0 - - - +3 2241 2241 2564 321 321 -2.02 0 - 99 0 - - - +1 2644 2686 2826 180 138 -6.14 0 0 99 - - - - -1 3066 2988 2842 222 144 -3.94 0 - 99 - 0 - - +3 3162 3174 3308 144 132 -7.81 0 - 99 0 - - - -1 3321 3321 3178 141 141 0.37 0 - 99 - 0 - - -2 3331 3316 3191 138 123 -0.84 0 - 99 - 0 0 - -1 3705 3543 3421 282 120 0.88 0 - 99 - 0 - - -1 3897 3891 3706 189 183 -0.25 0 - 99 - 0 0 - -2 3967 3904 3674 291 228 1.78 0 - 99 - - 0 - -1 4119 4104 3919 198 183 1.02 0 - 99 - 0 - - -2 4264 4192 4019 243 171 -1.24 0 - 99 - - 0 - +3 4086 4110 4268 180 156 -6.32 0 - 99 0 - 0 - -2 4393 4390 4265 126 123 0.15 0 - 99 - 0 0 - -1 4428 4332 4210 216 120 2.33 0 0 99 - 0 - - -3 4457 4439 4287 168 150 -8.06 0 - 99 - - - 0 -2 4570 4546 4397 171 147 -1.92 0 - 99 - - 0 - -1 4974 4971 4849 123 120 7.00 0 - 99 - 0 - - -1 5151 5097 4975 174 120 2.54 0 - 99 - 0 0 - 0002 +2 1223 1226 5158 3933 3930 10.33 99 - 99 - - - - -2 5176 5104 4931 243 171 -2.02 0 - 99 - - 0 - 0003 -1 5295 5295 5161 132 132 4.28 99 - - - 99 - - -2 5665 5602 5450 213 150 -3.88 0 - - 99 - 0 - 0004 +3 5406 5415 5669 261 252 4.48 99 - - 99 - - - 0005 -1 5784 5775 5599 183 174 -1.10 99 - - - 99 - - +1 5851 5899 6042 189 141 3.59 0 0 - 0 - - 99 0006 +3 5673 5745 6134 459 387 -1.74 99 - - 99 - - - +1 6064 6070 6273 207 201 0.70 0 0 - - - - 99 +1 6274 6289 6426 150 135 -1.18 0 0 - 0 - - 99 +3 6135 6279 6482 345 201 -0.61 0 - - 0 - - 99 -2 6580 6577 6455 123 120 -3.25 0 - 0 - 0 0 99 -1 6603 6552 6430 171 120 -6.92 0 - 0 - 0 - 99 +1 6544 6607 6735 189 126 -3.01 0 0 - 1 - - 98 -2 6910 6811 6656 252 153 -6.49 0 - 0 - - 0 99 +3 6843 6864 7055 210 189 -1.45 0 - - 0 - - 99 0007 -3 7127 7115 5769 1356 1344 8.87 99 - - - - - 99 0008 +1 6979 7015 7146 165 129 -6.60 17 17 82 - - - - 0009 -1 7368 7344 7138 228 204 3.49 99 - - - 99 - - -3 7484 7481 7341 141 138 -7.75 0 - 99 - - - 0 -1 7779 7737 7579 198 156 0.67 0 - 99 - 0 - - 0010 +2 7244 7265 7906 660 639 11.01 99 - 99 - - - - 0011 -2 8038 7915 7676 360 237 -1.40 99 - - - - 99 - -3 8078 7961 7800 276 159 -12.97 0 - - - - 99 0 -1 8100 8094 7909 189 183 -1.12 0 - 99 - 0 - - -2 8404 8308 8039 363 267 -2.84 0 - 99 - - 0 - -1 8472 8454 8323 147 129 -8.98 0 - 99 - 0 - - -1 8649 8646 8491 156 153 -6.89 0 - 99 - 0 0 0 -2 8791 8752 8432 357 318 -1.16 0 - 99 - - 0 - -1 8970 8961 8803 165 156 -4.81 0 - 99 - 0 - - 0012 +2 7913 7919 8998 1083 1077 11.60 99 - 99 - - - - -1 9288 9243 9103 183 138 -1.28 0 99 - - 0 - - -3 9614 9476 9300 312 174 -0.06 0 99 - - - - 0 -1 9708 9531 9394 312 135 -1.60 0 99 - - 0 - 0 +2 9665 9686 9847 180 159 -11.53 0 99 0 - - - - -3 9965 9950 9819 144 129 2.68 0 99 - - 0 - 0 0013 +1 8983 8995 9969 984 972 12.97 99 99 - - - - - -1 9981 9903 9709 270 192 -2.13 0 99 - - 0 - - -3 10283 10241 10110 171 129 -4.97 0 0 99 - - - 0 +1 10081 10156 10302 219 144 -5.23 0 0 99 - - - - -1 10674 10671 10549 123 120 1.08 0 - 99 - 0 - - -1 11091 11073 10951 138 120 -5.07 0 - 99 - 0 0 - 0014 +2 9995 9998 11155 1158 1155 12.39 99 - 99 - - - - -2 11161 11095 10664 495 429 0.97 0 - 99 - - 0 - -1 11433 11412 11290 141 120 -9.00 0 - - 99 0 0 - -2 11488 11485 11279 207 204 -3.31 0 - - 99 - 0 - -3 11609 11573 11385 222 186 -5.83 0 - - 99 - - 0 +1 11701 11710 11841 138 129 -5.71 0 0 - 99 - - 0 0015 +3 11139 11178 11864 723 684 11.00 99 - - 99 - - - 0016 -3 11876 11867 11691 183 174 2.38 99 - - - - - 99 -1 12141 12111 11908 231 201 2.17 0 - 99 - 0 - - -2 12268 12145 11987 279 156 5.71 2 - 97 - 0 2 - 0017 +2 11804 11894 12292 486 396 7.62 99 - 99 - - - - 0018 +1 12328 12352 12588 258 234 -2.83 99 99 - - - - - 0019 +3 12459 12468 12593 132 123 -8.47 99 - - 99 - - - -1 12954 12930 12781 171 147 -3.61 0 - - 0 0 - 99 +3 12711 13206 13370 657 162 -0.70 0 - - 0 - - 99 0020 -3 13673 13646 12681 990 963 11.31 99 - - - - - 99 0021 +3 13371 13539 13697 324 156 0.75 99 - - 99 - - - -2 14062 14059 13898 162 159 -3.97 0 0 - - 99 0 - +2 14075 14111 14242 165 129 -4.62 0 0 0 - 99 - - -3 14303 14300 14145 156 153 -16.31 0 0 - - 99 - 0 0022 +1 13567 13576 14499 930 921 -2.53 0 0 - - 99 - - -2 14551 14527 14378 171 147 -6.76 0 - - - 99 0 - +2 14570 14573 14704 132 129 0.21 3 0 3 0 96 - - -3 14906 14840 14718 186 120 -14.84 0 0 1 - 98 - 0 0023 -1 14931 14919 13666 1263 1251 5.66 99 - - - 99 - - +1 14500 14701 14991 489 288 -5.31 0 0 99 - - - - +3 14982 15207 15443 459 234 -2.58 0 - 0 0 - 99 - 0024 +2 14705 14705 15544 837 837 -1.00 0 - 0 - - 99 - +3 15444 15537 15698 252 159 2.13 0 - - 0 - 99 - +2 15545 15755 15892 345 135 -8.49 0 - 0 - - 99 - +3 15777 15846 16031 252 183 1.09 2 - - 2 - 97 - 0025 -2 16108 16105 14957 1149 1146 6.31 99 - - - - 99 - 0026 -3 16397 16352 16140 255 210 1.52 99 - - - - - 99 -3 16892 16601 16476 414 123 -1.62 0 99 - - 0 - 0 -1 16971 16698 16465 504 231 5.50 0 99 - - 0 - - 0027 +1 16180 16198 16980 798 780 12.51 99 99 - - - - - 0028 -2 17275 17248 17084 189 162 4.10 99 - - - - 99 - +1 17188 17215 17358 168 141 -4.48 0 0 - 99 - - 0 -2 17533 17419 17276 255 141 -1.47 0 - - 99 - 0 0 +2 17459 17468 17668 207 198 -11.98 0 - 0 99 - - 0 -1 17832 17682 17503 327 177 -15.94 0 - - 99 0 - 0 +2 17696 17762 17890 192 126 -7.99 0 - 0 99 - - 0 -2 18061 17968 17822 237 144 1.75 0 - - 99 - 0 0 0029 -3 18236 18152 17154 1080 996 -4.05 0 - - 99 - - 0 +1 18556 18604 18768 210 162 -6.93 0 0 - 99 - - 0 -3 18860 18497 18312 546 183 -2.38 0 - - 99 - - 0 -1 18906 18882 18751 153 129 -7.66 0 - - 99 0 - - -2 18955 18928 18794 159 132 -7.22 0 - 0 99 - 0 - +2 18794 18812 18976 180 162 -5.92 0 - 0 99 - - - +2 19103 19103 19282 177 177 -2.69 0 - 0 99 - - - 0030 +3 17127 17184 19376 2247 2190 11.31 99 - - 99 - - - 0031 -2 19492 19486 19361 129 123 3.23 99 - - - - 99 - +1 19561 19699 19842 279 141 -8.72 0 0 0 - - 99 - +2 19703 19733 19924 219 189 0.65 0 - 0 - - 99 - -1 20049 19998 19855 192 141 -1.15 0 0 - - 0 99 - +1 19843 19921 20136 291 213 -6.15 0 0 0 - - 99 - +2 19925 19940 20182 255 240 -3.66 0 - 0 - - 99 - -1 20304 20286 20152 150 132 -9.20 0 - - - 0 99 - +3 20166 20265 20399 231 132 -2.48 0 - 0 0 - 99 - +3 20484 20496 20636 150 138 -5.56 0 - 0 0 - 99 - +1 20746 20761 20889 141 126 -9.18 0 0 0 0 - 99 0 +3 20694 20739 20903 207 162 1.39 0 - 0 0 - 99 0 -3 20939 20924 20712 225 210 -7.33 0 - 0 - - 99 0 0032 -2 21142 21136 19499 1641 1635 10.14 99 - - - - 99 -