Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZBK010000341.438.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZBK010000341.438.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZBK010000341.438.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CZBK010000341.438.AOI_01 Sequence length = 12693 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 232 232 80 150 150 -6.16 97 - - - 2 97 - 0002 -1 363 339 52 309 285 -4.43 99 - - - 99 - - +1 424 547 705 279 156 4.98 0 0 0 - 99 - - +2 551 581 784 231 201 -0.09 0 - 0 - 99 - - 0003 -1 888 798 400 486 396 11.91 99 - - - 99 - - -2 991 982 851 138 129 -5.75 0 - - 0 - 0 99 0004 +3 816 825 1001 183 174 3.74 99 - - 99 - - - +3 1083 1119 1307 222 186 -3.72 0 - - 0 - - 99 +2 1259 1280 1402 141 120 -7.52 0 0 0 - - - 99 +1 1204 1273 1413 207 138 -4.19 0 0 - - - - 99 0005 -3 1553 1514 828 723 684 10.52 99 - - - - - 99 +2 1601 1613 1741 138 126 -4.04 0 0 0 - 99 - - +1 1531 1597 2028 495 429 0.98 0 0 - - 99 - - +2 2018 2021 2143 123 120 0.38 0 - 0 - 99 - - +3 2409 2451 2582 171 129 -5.57 0 - - 0 99 0 - -2 2611 2536 2399 210 135 -1.76 0 - - - 99 0 - 0006 -1 2697 2643 1537 1158 1104 7.94 99 - - - 99 - - +3 2727 2742 2873 144 129 2.86 0 - 0 0 - 99 - 0007 +2 2711 2714 2983 270 267 -1.31 99 - 99 - - - - -1 3027 3012 2845 180 165 -10.46 0 - - - 0 99 - +2 2984 3161 3298 312 135 -0.44 0 - 0 0 - 99 - +3 3078 3216 3392 312 174 -0.39 0 - - 0 - 99 - 0008 -2 3709 3697 2723 984 972 12.02 99 - - - - 99 - 0009 +2 3404 3419 3721 315 300 0.88 99 - 99 - - - - +2 3722 3731 3889 165 156 -5.47 0 - 0 - 99 - - +2 4043 4046 4201 156 153 -8.88 0 0 0 0 99 - - +1 3901 4090 4260 357 168 -3.14 0 0 - 0 99 - - +2 4220 4238 4369 147 129 -10.78 0 - 0 - 99 - - +1 4288 4384 4653 363 267 -1.83 0 0 - - 99 - - 0010 -1 4779 4773 3694 1083 1077 10.89 99 - - - 99 - - +2 4592 4661 4783 189 120 -4.86 0 0 0 0 99 - - +3 4614 4731 4892 276 159 -12.58 0 99 - 0 - - - 0011 +1 4654 4777 5016 360 237 -1.41 99 99 - - - - - +2 4913 4955 5113 198 156 -1.81 0 - 0 - 99 - - +3 5208 5220 5351 141 129 -10.57 0 0 - 0 99 - - 0012 -1 5448 5427 4786 660 639 11.43 99 - - - 99 - - 0013 +2 5324 5396 5554 228 156 2.56 99 - 99 - - - - 0014 -2 5713 5677 5546 165 129 -5.63 58 - - - 41 58 - -3 5849 5828 5637 210 189 -0.47 0 - - 99 - - 0 +1 5782 5881 6036 252 153 -6.77 0 0 - 99 0 - - -2 6148 6100 5957 189 141 -0.72 0 - - 9 - 0 90 +2 6089 6140 6262 171 120 -6.93 0 - 0 99 0 - - -2 6418 6403 6266 150 135 0.50 0 - - 99 - 0 0 -3 6557 6413 6210 345 201 1.57 0 - - 99 - - 0 -2 6628 6622 6419 207 201 2.27 4 - - 95 - 4 - -2 6841 6793 6650 189 141 5.39 5 - - 94 - 5 0 0015 +3 5565 5577 6923 1356 1344 6.60 99 - - 99 - - - 0016 -3 7022 6947 6558 462 387 -1.73 99 - - - - - 99 +1 7027 7090 7242 213 150 -4.14 0 0 - - - - 99 0017 -3 7286 7268 7023 261 243 4.87 99 - - - - - 99 0018 +2 7397 7397 7531 132 132 4.47 59 - 59 40 - - - 0019 +3 7389 7401 7547 156 144 1.94 99 - - 99 - - - +2 7541 7541 7717 174 174 1.83 0 0 0 - 99 - - +1 7516 7588 7761 243 171 -0.29 0 0 - - 99 - - +2 7718 7721 7843 123 120 5.52 0 - 0 - 99 - - +1 8122 8146 8295 171 147 -2.26 0 0 - - 99 - - +3 8235 8253 8405 168 150 -7.39 0 - - 0 99 - - +1 8299 8302 8427 126 123 0.27 0 0 0 - 99 - - +2 8264 8360 8482 216 120 0.88 0 - 0 - 99 0 - -3 8606 8582 8424 180 156 -5.31 0 0 - - 99 - 0 +1 8428 8500 8673 243 171 -1.51 0 0 - - 99 - - +2 8573 8630 8773 198 141 2.06 0 - 0 - 99 - - +2 8795 8801 8986 189 183 -1.13 0 0 0 - 99 - - +1 8725 8788 9018 291 228 2.98 0 0 - - 99 - - +2 8987 9140 9271 282 129 2.69 0 - 0 - 99 - - +1 9361 9376 9501 138 123 -0.40 0 0 0 - 99 - - +2 9371 9371 9514 141 141 -1.61 0 - 0 - 99 - - -3 9530 9518 9384 144 132 -5.87 0 - - - 99 - 0 +2 9626 9704 9850 222 144 -1.18 0 - 0 - 99 - - -2 10048 10006 9866 180 138 -6.07 0 - - - 99 0 - -2 10414 10405 10241 171 162 -10.48 0 - - - 99 0 0 +1 10273 10285 10437 162 150 0.35 0 0 - - 99 - 0 -3 10451 10451 10128 321 321 -1.60 0 - - - 99 - 0 -2 10699 10690 10565 132 123 -5.68 0 - - - 99 0 - +2 10604 10616 10756 150 138 -1.27 0 - 0 - 99 - - +2 11036 11036 11164 126 126 -1.03 0 - 0 - 99 - - -3 11291 11231 11106 183 123 -8.47 0 0 - - 99 - 0 0020 -1 11469 11466 7534 3933 3930 10.73 99 - - - 99 - - +1 12229 12310 12468 237 156 0.30 0 0 - - 99 - - 0021 -1 12693 12672 11602 1089 1068 10.31 99 - - - 99 - -