Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZAN010000081.338.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZAN010000081.338.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CZAN010000081.338.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CZAN010000081.338.AOI_01 Sequence length = 19767 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 85 210 207 123 -0.98 12 12 - - - 76 10 0002 -1 312 267 88 222 177 -3.56 99 - - - 99 - - +2 629 644 775 144 129 -10.67 0 - 0 - - - 99 +1 811 838 972 159 132 -2.44 0 0 - - - - 99 +3 906 927 1199 291 270 -0.73 0 - - 0 - 0 99 -2 1210 1000 878 330 120 -2.27 0 - - - - 0 99 +1 1273 1372 1497 222 123 1.49 0 0 - - - - 99 +1 1705 1801 1944 237 141 1.85 0 0 - 0 - - 99 -1 2070 2004 1876 192 126 -6.54 0 - - 0 0 - 99 +2 1934 2084 2263 327 177 -16.30 0 - 0 0 - - 99 -1 2307 2298 2098 207 198 -10.96 0 - - 0 0 - 99 +1 2233 2347 2490 255 141 -2.57 0 0 - 0 - - 99 -2 2578 2551 2408 168 141 -5.25 0 - - 0 - 0 99 0003 +3 1530 1614 2612 1080 996 -3.88 0 - - 0 - - 99 0004 -3 2639 2582 390 2247 2190 10.88 99 - - - - - 99 0005 +1 2491 2518 2682 189 162 4.66 99 99 - - - - - +3 2874 3165 3338 462 171 -5.14 0 - 0 0 - 99 - +2 2795 3068 3403 606 333 4.66 0 - 0 - - 99 - 0006 -2 3586 3568 2786 798 780 11.52 99 - - - - 99 - 0007 +3 3369 3414 3626 255 210 1.37 99 - - 99 - - - -3 3989 3983 3735 252 246 1.00 10 89 - - - - 10 -1 4221 4011 3874 345 135 -7.32 0 99 - - 0 - - -3 4322 4238 4068 252 168 2.76 0 99 - - - - 0 -3 4784 4646 4323 459 321 -1.52 0 99 - - 0 - 0 0008 +1 3658 3661 4809 1149 1146 5.21 99 99 - - - - - +3 4860 4926 5048 186 120 -14.73 0 - 99 0 0 0 - 0009 -1 5061 5043 4222 837 819 -1.42 0 99 - - 0 - - -1 5196 5193 5062 132 129 0.30 4 0 95 - 4 0 0 -2 5266 5065 4775 489 288 -5.02 0 - - - 99 0 - +1 5215 5239 5388 171 147 -7.56 0 0 99 - - - - +3 5463 5466 5621 156 153 -17.52 0 - 99 0 - 0 - -1 5691 5655 5524 165 129 -5.07 0 - 99 - 0 0 - +1 5704 5707 5868 162 159 -3.23 0 0 99 - - 0 - 0010 -2 6040 6022 5267 771 753 -2.52 0 - 99 - - 0 - -1 6072 6063 5938 132 123 -3.16 0 - 99 - 0 - - 0011 +2 4835 4847 6100 1263 1251 4.70 99 - 99 - - - - 0012 -2 6199 6190 6041 156 147 -2.65 99 - - - - 99 - 0013 -3 6395 6227 6069 324 156 1.16 99 - - - - - 99 +2 6812 6836 6985 171 147 -3.70 0 - 0 99 - - 0 -3 7055 6560 6396 657 162 0.16 0 - - 99 - - 0 0014 +3 6093 6120 7085 990 963 10.63 99 - - 99 - - - 0015 -3 7307 7307 7173 132 132 -7.97 99 - - - - - 99 +1 7498 7621 7821 321 198 4.90 0 0 0 - 99 - - +2 7625 7655 7858 231 201 1.40 0 - 0 - 99 - - 0016 -1 7962 7872 7474 486 396 8.32 99 - - - 99 - - -2 8065 8056 7925 138 129 -6.20 0 - - 0 - 0 99 0017 +3 7890 7899 8075 183 174 3.17 99 - - 99 - - - +3 8157 8193 8381 222 186 -5.29 0 - - 0 - - 99 +2 8333 8354 8476 141 120 -8.69 0 0 0 - - - 99 +1 8278 8347 8487 207 138 -3.54 0 0 - - - - 99 0018 -3 8627 8588 7902 723 684 11.26 99 - - - - - 99 +2 8675 8693 8815 138 120 -5.91 0 0 0 - 99 - - +1 8605 8671 9102 495 429 0.94 0 0 - - 99 - - +2 9092 9095 9217 123 120 0.98 0 - 0 - 99 - - +3 9483 9525 9656 171 129 -6.25 0 - - 0 99 0 - -2 9685 9610 9464 219 144 -4.84 0 - - - 99 0 - 0019 -1 9771 9768 8611 1158 1155 12.05 99 - - - 99 - - +3 9801 9816 9947 144 129 2.18 0 - 0 0 - 99 - 0020 +2 9785 9788 10057 270 267 -2.07 99 - 99 - - - - -1 10101 10086 9919 180 165 -12.12 0 - - - 0 99 - +2 10058 10235 10372 312 135 0.28 0 - 0 0 - 99 - +3 10152 10290 10466 312 174 -0.78 0 - - 0 - 99 - +2 10478 10523 10663 183 138 -1.21 0 - 0 - - 99 - 0021 -2 10783 10771 9797 984 972 12.41 99 - 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- 99 - - 0 -2 13702 13696 13493 207 201 0.93 0 - - 99 - 0 - -2 13915 13867 13724 189 141 4.75 0 - - 99 - 0 0 0027 +3 12639 12651 13997 1356 1344 7.90 99 - - 99 - - - 0028 -3 14096 14021 13632 462 387 -2.11 99 - - - - - 99 +1 14101 14164 14316 213 150 -3.79 0 0 - - - - 99 0029 -3 14360 14351 14097 261 252 4.56 99 - - - - - 99 0030 +2 14471 14471 14605 132 132 5.21 65 - 65 34 - - - 0031 +3 14463 14475 14621 156 144 2.59 99 - - 99 - - - +2 14615 14615 14791 174 174 1.30 0 0 0 - 99 - - +1 14590 14662 14835 243 171 -2.68 0 0 - - 99 - - +2 14792 14795 14917 123 120 6.74 0 - 0 - 99 - - +1 15196 15220 15369 171 147 -1.91 0 0 - - 99 - - +3 15309 15327 15479 168 150 -9.89 0 - - 0 99 - - +1 15373 15376 15501 126 123 0.43 0 0 0 - 99 - - +2 15338 15434 15556 216 120 1.30 0 - 0 - 99 0 - -3 15680 15656 15498 180 156 -6.81 0 0 - - 99 - 0 +1 15502 15574 15747 243 171 -1.16 0 0 - - 99 - - +2 15647 15662 15847 198 183 0.44 0 - 0 - 99 - - +2 15869 15875 16060 189 183 -0.14 0 0 0 - 99 - - +1 15799 15862 16092 291 228 2.07 0 0 - - 99 - - +2 16061 16223 16345 282 120 0.58 0 - 0 - 99 - - +1 16435 16450 16575 138 123 -1.37 0 0 0 - 99 - - +2 16445 16445 16588 141 141 -1.00 0 - 0 - 99 - - -3 16604 16592 16458 144 132 -8.15 0 - - - 99 - 0 +2 16700 16778 16924 222 144 -2.73 0 - 0 - 99 - - -2 17122 17080 16940 180 138 -6.77 0 - - - 99 0 - -2 17488 17479 17315 171 162 -9.46 0 - - - 99 0 0 +1 17347 17359 17511 162 150 0.64 0 0 - - 99 - 0 -3 17525 17525 17202 321 321 -1.87 0 - - - 99 - 0 -2 17773 17764 17639 132 123 -6.66 0 - - - 99 0 - +2 17678 17690 17830 150 138 -2.75 0 - 0 - 99 - - +2 18110 18110 18238 126 126 -1.35 0 - 0 - 99 - - -3 18365 18305 18180 183 123 -7.48 0 0 - - 99 - 0 0032 -1 18543 18540 14608 3933 3930 10.84 99 - - - 99 - - +1 19303 19345 19542 237 195 -1.01 0 0 - - 99 - - 0033 -1 19767 19746 18676 1089 1068 10.34 99 - - - 99 - -