Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000181.266.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000181.266.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000181.266.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CYZI010000181.266.AOI_01 Sequence length = 11490 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 220 184 53 165 129 -2.13 0 - - 99 - 0 0 -2 388 376 254 132 120 -3.78 0 - - 99 - 0 - 0001 +3 3 33 437 432 402 6.98 99 - - 99 - - - 0002 -3 467 446 306 159 138 -3.08 99 - - - - - 99 0003 +1 397 427 561 162 132 -1.76 99 99 - - - - - +3 438 471 653 213 180 1.76 0 - - 0 - - 99 +2 830 851 973 141 120 -3.16 0 - 0 0 - - 99 -2 1051 1018 896 153 120 -3.05 0 - - 0 - 0 99 +3 852 1029 1151 297 120 4.17 0 - - 0 - - 99 -1 1590 1584 1444 144 138 -3.90 0 - - - 0 - 99 +1 1468 1522 1680 210 156 0.50 0 0 - 0 - - 99 +2 1571 1595 1723 150 126 -1.56 0 - 0 0 - - 99 +3 1479 1563 1727 246 162 -0.56 0 - - 0 - - 99 0004 +1 1789 1798 1923 132 123 1.70 66 66 - - - - 33 -1 2256 2244 2080 174 162 4.46 1 - - - 1 - 98 0005 -3 2525 2516 468 2055 2046 7.53 99 - - - - - 99 0006 +3 2508 2511 2699 189 186 3.50 99 - - 99 - - - 0007 -2 2938 2815 2615 321 198 -7.50 99 - - - - 99 - +2 2867 2891 3013 144 120 -5.39 0 8 0 - 91 - - +1 2848 2914 3336 486 420 1.49 0 0 - - 99 - - +3 3213 3222 3362 147 138 0.27 0 - - 0 99 - - +2 3260 3290 3499 237 207 -0.27 0 - 0 - 99 - - +3 3441 3441 3605 162 162 -2.43 0 - - 0 99 - - 0008 -1 3666 3663 2674 990 987 7.95 99 - - - 99 - - -1 4068 4059 3901 165 156 3.06 0 99 - - 0 - - +2 4364 4370 4513 147 141 -4.44 0 99 0 - - - - -1 4536 4509 4381 153 126 4.42 0 99 0 - 0 - - -2 4792 4744 4598 192 144 -7.49 0 99 - - 0 0 - -1 4899 4683 4537 360 144 0.24 0 99 - - 0 - - +3 4815 4815 4940 123 123 -6.96 0 99 - 0 - - - -2 5023 4978 4832 189 144 -3.93 0 99 - - - 0 - 0009 +1 3880 3910 5226 1344 1314 10.35 99 99 - - - - - -3 5264 5018 4875 387 141 -0.31 0 99 - - - 0 0 0010 -3 5447 5444 5265 180 177 3.85 28 - - - 71 - 28 0011 -1 5691 5475 5251 438 222 3.22 99 - - - 99 - - -1 5889 5865 5716 171 147 -2.32 0 99 - - 0 - 0 +3 5814 5832 5993 177 159 0.84 0 99 - 0 - - 0 -3 6200 6071 5679 519 390 1.15 0 99 - - - - 0 -2 6394 6385 6260 132 123 3.84 0 99 - - - 0 - -1 6885 6756 6622 261 132 0.20 0 99 - - 0 - - -1 7077 7062 6886 189 174 -4.66 0 99 - - 0 - - 0012 +1 5275 5275 7122 1845 1845 11.06 99 99 - - - - - 0013 -2 7195 7132 7001 192 129 -2.40 99 - - - - 99 - -1 7473 7449 7312 159 135 -4.65 0 - 99 - 0 0 - -2 7501 7357 7232 267 123 1.68 0 - 99 - - 0 - +3 7626 7662 7850 222 186 -2.17 0 - 99 0 - 0 - -2 7894 7729 7595 297 132 -9.54 0 - 99 - - 0 - 0014 +2 7103 7124 8056 951 930 8.09 99 - 99 - - - - 0015 -2 8062 8062 7940 120 120 4.02 34 - - 65 - 34 - 0016 +3 7899 7902 8078 177 174 3.31 99 - - 99 - - - 0017 +1 8044 8065 8235 189 168 3.20 99 99 - - - - - 0018 -1 8277 8265 8137 138 126 6.06 99 - - - 99 - - -3 8501 8501 8379 120 120 2.08 0 - - 99 - - 0 0019 +3 8316 8331 8573 255 240 3.43 99 - - 99 - - - 0020 -2 8659 8617 8468 189 147 6.28 99 - - - - 99 - 0021 +2 8798 8801 8935 135 132 10.20 99 - 99 - - - - 0022 -1 8985 8952 8827 156 123 3.56 99 - - - 99 - - 0023 -3 9203 9188 9057 144 129 8.18 99 - - - - - 99 0024 -1 9498 9354 9217 279 135 4.82 99 - - - 99 - - 0025 +1 9319 9343 9552 231 207 2.73 99 99 - - - - - 0026 +2 9479 9482 9637 156 153 4.85 99 - 99 - - - - 0027 -3 10079 9998 9840 237 156 11.53 99 - - - - - 99 -1 10221 10170 10033 186 135 -0.41 0 99 - - 0 - - -3 10892 10862 10692 198 168 6.23 0 99 - - - - 0 0028 +1 9988 10000 11385 1395 1383 14.50 99 99 - - - - -